Factsheet for TraesCS2D01G175100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G193700.1	Wheat	cytosol	95.44	95.9
TraesCS2A01G167400.1	Wheat	cytosol	95.2	95.2
Os07t0617700-01	Rice	cytosol	70.98	72.91
HORVU2Hr1G030810.1	Barley	plastid	94.24	71.98
OQU90263	Sorghum	cytosol, mitochondrion, plastid	67.63	68.45
Zm00001d022151_P001	Maize	cytosol, mitochondrion, plastid	66.43	66.75
Zm00001d006874_P001	Maize	cytosol	64.51	66.42
TraesCS5D01G106500.1	Wheat	cytosol	62.35	57.78
GSMUA_Achr7P11470_001	Banana	nucleus	40.53	48.01
KRH15707	Soybean	cytosol	44.36	45.45
KRH05328	Soybean	cytosol	44.12	45.21
GSMUA_Achr10P...	Banana	cytosol	43.88	44.53
VIT_04s0008g03190.t01	Wine grape	cytosol	42.93	43.98
KRH61620	Soybean	cytosol	42.69	43.1
KRH52288	Soybean	cytosol	42.45	42.86
CDY71979	Canola	cytosol	38.61	40.86
CDX72391	Canola	cytosol	38.61	40.76
Bra037018.1-P	Field mustard	cytosol	38.13	40.46
Solyc08g067300.1.1	Tomato	nucleus	39.33	39.61
PGSC0003DMT400019032	Potato	nucleus	39.33	39.23
Bra011423.1-P	Field mustard	nucleus	37.65	38.48
CDX75335	Canola	nucleus	37.65	38.48
CDX68951	Canola	cytosol	37.89	38.44
AT4G33160.2	Thale cress	cytosol	38.85	31.27
TraesCS3D01G428200.2	Wheat	cytosol	21.34	19.91
TraesCS2D01G541700.1	Wheat	mitochondrion	18.94	19.22
TraesCS7D01G468700.1	Wheat	plastid	19.42	18.41
TraesCS3D01G239300.1	Wheat	cytosol	16.31	16.92

Protein Annotations

EnsemblPlants:TraesCS2D01G175100.1	EnsemblPlantsGene:TraesCS2D01G175100	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	PANTHER:PTHR45094	PANTHER:PTHR45094:SF1
PFAM:PF00646	PFscan:PS50181	SEG:seg	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:118551790..118553043

Molecular Weight (calculated)

44669.8 Da

IEP (calculated)

4.619

GRAVY (calculated)

-0.078

Length

417 amino acids

Sequence
(BLAST)

001: MAAAVAASGG RKRKCEELSA PELGQLHEDM LERVLARLPP ASFFRLRGVC RRWREAAGSP AFLAACARVP ARDPWFLMLS DQQEEEEQRP PCPAIAFDAA
101: ERTWARCRGA PGPVPVAAAG GLVLYRAPET GELTVANPLS GVSRALPPPP PAATDALYAV AMYGSPYRVV LILGELPNLS MTVFDSSKNA WEDAVPLSRK
201: TEASPADAQA RHDDDDIDED MDGEGDGAVY YLSKSGDVMV SSTQRSAARQ YSSAVTCRSD GGEAVAYFLS HSGAVVACDL ARRVFTELPR ILPVHFEYSI
301: DVVACDGRAY VVVLSEYLDT ASLRLWEFSD GAWRQVAAMP PAMSHAFYGK KADVNCVGHG GRVMVCVSSG DAGANGCFMC DVGSNAWEEL PRCAGGDGEA
401: MDFVAAFSFE PRIEVAV

Best Arabidopsis Sequence Match ( AT4G33160.1 )
(BLAST)

001: MPSSATSTYL LSLKQVSLTA SSPLLLQLKD RFFHQPKLLN MGFSTGKRKS RDEEEDRVSF FASEFPMDDL NDDVLERVLS WLPTSCFFRM SSVCKRWKSS
101: QTSKSFKLAC SQIPTRDPWF FMIDNDSNSS SFVFDSTENS WKNLNRRDFL HHHRQDFIPV ASSGGLLCYR CSISGDFLLR NPLTGSSRDI PSQDNNNNKP
201: LQAVAMTTTT VTPSSYTLVT ISGEIPNLSF KIYESNADSW SKDQELESVK NNDSSLHDDY DTDSGTVYFL SKQGNVVVAS NNLQRSPSKQ YSSVITVTDE
301: AEIVYFLSSY GTIVACDLTK RCFTELPKLL PPFLEYSIDL VECEGTMYVI LLSEFFESAS LRIWRLDNNR EWVQVGMLPP ALSHELYGKK GDINCVGGAG
401: NKILVCFNAS PPEVYCRYFV YDLVAEEWNE LPKCFKDGEA VDFVSALSFQ PRIEATV

Arabidopsis Description

F-box family protein [Source:TAIR;Acc:AT4G33160]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.