Factsheet for TraesCS2D01G541700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0668600-01	Rice	plastid	80.29	78.57
GSMUA_Achr1P09520_001	Banana	cytosol	66.42	78.22
EES11618	Sorghum	plastid	78.59	76.54
HORVU2Hr1G118340.2	Barley	cytosol	69.34	76.0
Zm00001d026558_P001	Maize	cytosol, mitochondrion, plastid	77.37	75.71
Zm00001d026557_P001	Maize	cytosol, mitochondrion, plastid	77.37	75.71
KRH45144	Soybean	cytosol, plastid	68.61	64.38
PGSC0003DMT400003737	Potato	cytosol	67.88	63.7
Solyc02g089310.1.1	Tomato	cytosol, plastid	67.64	63.47
VIT_14s0083g00810.t01	Wine grape	cytosol	67.4	63.39
CDX70633	Canola	cytosol, plastid	66.18	62.67
CDX78648	Canola	cytosol, plastid	66.18	62.53
Bra006317.1-P	Field mustard	cytosol, plastid	65.94	62.3
AT5G15710.2	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, plastid, vacuole	66.18	60.71
KRH01425	Soybean	cytosol	66.42	60.4
TraesCS3D01G239300.1	Wheat	cytosol	24.09	24.63
TraesCS3D01G428200.2	Wheat	cytosol	23.84	21.92
TraesCS7D01G468700.1	Wheat	plastid	21.17	19.77
TraesCS2D01G175100.1	Wheat	cytosol	19.22	18.94
TraesCS5D01G106500.1	Wheat	cytosol	19.22	17.56

Protein Annotations

EnsemblPlants:TraesCS2D01G541700.1	EnsemblPlantsGene:TraesCS2D01G541700	Gene3D:1.20.1280.50	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	PANTHER:PTHR45291	PFAM:PF00646	PFscan:PS50181	SEG:seg	SMART:SM00256
SUPFAM:SSF50965	SUPFAM:SSF81383	MapMan:19.2.2.8.1.4.6	:	:	:

Description

No Description!

Coordinates

chr2D:+:620535217..620536452

Molecular Weight (calculated)

45538.1 Da

IEP (calculated)

9.302

GRAVY (calculated)

-0.006

Length

411 amino acids

Sequence
(BLAST)

001: MRELAARLTA AASAGARAAA AAARPTSPSR PRTRPRGLDE ETCAATPAPS AAAAPPADVP MDADVWAALP DDLLLEVLAR VPPFLLPRLR AVSRRWAATV
101: PRGPAFLAAH AAAPSHGPCV LAFARGGPAP AHCAALSLPL RARYRLPLAF LPAWDLWLVG SSGGLVCFSG FDASSVFRTL VCNPLTQAWR VLPEMHHNQQ
201: RQLVLAVDRR LRSFKVIATS DVYGETLPTE VYDSKADRWS VHQMMPAENL CSSKMAFCDS RLYLETLSPL GLMMYRVDAG KWEHIPAKFP RSLLDGYLVA
301: GARKRLFLVG RIGLYSTLQS MRIWELDHGR TVWVEISRMP PKYFRALLRL SAERFECFGQ DNLICFTSWN QGRGLLYDVD KKAWSWIAGC ASQLCNTQFC
401: FYEPRFDTSI Y

Best Arabidopsis Sequence Match ( AT5G15710.2 )
(BLAST)

001: MERLGFWGLL MGSVEKSLDS GNSLACSASA KNGDEESSTS SKQVSPLKGS GSRNTSPLGR VGSRNTSPSR QKVVKTKPRG LEEETVASFG KQVVADVQME
101: DGIWAMLPED LLNEILARVP PFMIFRIRSV CKKWNLILQD NSFLKFHSNV SSHGPCLLTF WKNSPQIPQC SVFSLPLKTW YKIPFTFLPP WAFWLVGSSG
201: GLVCFSGLDG LTFRTLVCNP LMQSWRTLPS MHYNQQRQLI MVVDRSDKSF KVIATSDIYG DKSLPTEVYD SKTDKWSLHQ IMPAVNLCSS KMAYCDSRLY
301: LETLSPLGLM MYRLDSGQWE HIPAKFPRSL LDGYLVAGTQ KRLFLVGRIG LYSTLQSMRI WELDHTKVSW VEISRMPPKY FRALLRLSAE RFECFGQDNL
401: ICFTSWNQGK GLLYNVDKKI WSWISGCALQ SCNSQVCFYE PRFDASVL

Arabidopsis Description

F-box/kelch-repeat protein At5g15710 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFV5]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.