Factsheet for Solyc02g089310.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003737	Potato	cytosol	98.63	98.63
VIT_14s0083g00810.t01	Wine grape	cytosol	87.9	88.1
GSMUA_Achr1P09520_001	Banana	cytosol	68.95	86.53
KRH45144	Soybean	cytosol, plastid	84.02	84.02
AT5G15710.2	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, plastid, vacuole	84.02	82.14
CDX78648	Canola	cytosol, plastid	79.68	80.23
Bra006317.1-P	Field mustard	cytosol, plastid	79.45	80.0
CDX70633	Canola	cytosol, plastid	79.22	79.95
KRH01425	Soybean	cytosol	81.51	78.98
Os04t0668600-01	Rice	plastid	67.81	70.71
EES11618	Sorghum	plastid	66.44	68.96
Zm00001d026557_P001	Maize	cytosol, mitochondrion, plastid	65.98	68.81
Zm00001d026558_P001	Maize	cytosol, mitochondrion, plastid	65.98	68.81
TraesCS2D01G541700.1	Wheat	mitochondrion	63.47	67.64
HORVU2Hr1G118340.2	Barley	cytosol	53.42	62.4
Solyc01g095370.2.1	Tomato	cytosol	23.97	25.99
Solyc05g015520.2.1	Tomato	cytosol	24.2	22.75
Solyc02g081670.1.1	Tomato	plastid	22.37	21.54
Solyc08g067300.1.1	Tomato	nucleus	18.95	20.05

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:2.120.10.80	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0031146	InterPro:IPR001810	InterPro:IPR015915	UniProt:K4BC83	InterPro:Kelch-typ_b-propeller	PFAM:PF00646
PFscan:PS50181	PANTHER:PTHR45291	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	EnsemblPlantsGene:Solyc02g089310.1
EnsemblPlants:Solyc02g089310.1.1	UniParc:UPI0002768A89	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:-:51171328..51172644

Molecular Weight (calculated)

50196.5 Da

IEP (calculated)

8.966

GRAVY (calculated)

-0.196

Length

438 amino acids

Sequence
(BLAST)

001: MVEIAESSES GSGLLNSTQV KSGSLPEEDS IHRQVSSFGS SGSRNTSPLG RIGSRNTSPS RQKVVKTKPR GLDEETVTTF VKAVQPDVQM EDNIWAMLPE
101: DLLNEILARV PPFMIFRLRS VCKRWNSILQ DHSFLKFHSQ VPSHGPCLLT FWKNSQTPQC SVFSLPLKQW FRIPFTFLPQ WAFWLVGSSG GLVCFSGLDV
201: LTFKTLVCNP LTQTWRTLPS MHYNQQRQLL MVVDRKDRSF KVIATSDIYG DRSLPTEVYD SKIDKWSLHQ TMPAVNLCSS KMAFCDSRLY LETLSPLGLM
301: MYRLDTGQWE HIPAKFPRSL LDGYLVAGTH KRLFLVGRIG LYSTLQSMRI WELDHSKVVW VEISRMPPRY FRALLRLSAE RFECFGQDNL ICFTSWNQGK
401: GLLYDVDKKV WSWIAGCALQ SYNSQVCFYE PRFDASIY

Best Arabidopsis Sequence Match ( AT5G15710.2 )
(BLAST)

001: MERLGFWGLL MGSVEKSLDS GNSLACSASA KNGDEESSTS SKQVSPLKGS GSRNTSPLGR VGSRNTSPSR QKVVKTKPRG LEEETVASFG KQVVADVQME
101: DGIWAMLPED LLNEILARVP PFMIFRIRSV CKKWNLILQD NSFLKFHSNV SSHGPCLLTF WKNSPQIPQC SVFSLPLKTW YKIPFTFLPP WAFWLVGSSG
201: GLVCFSGLDG LTFRTLVCNP LMQSWRTLPS MHYNQQRQLI MVVDRSDKSF KVIATSDIYG DKSLPTEVYD SKTDKWSLHQ IMPAVNLCSS KMAYCDSRLY
301: LETLSPLGLM MYRLDSGQWE HIPAKFPRSL LDGYLVAGTQ KRLFLVGRIG LYSTLQSMRI WELDHTKVSW VEISRMPPKY FRALLRLSAE RFECFGQDNL
401: ICFTSWNQGK GLLYNVDKKI WSWISGCALQ SCNSQVCFYE PRFDASVL

Arabidopsis Description

F-box/kelch-repeat protein At5g15710 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFV5]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.