Factsheet for VIT_14s0083g00810.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g089310.1.1	Tomato	cytosol, plastid	88.1	87.9
PGSC0003DMT400003737	Potato	cytosol	87.64	87.44
GSMUA_Achr1P09520_001	Banana	cytosol	69.11	86.53
KRH45144	Soybean	cytosol, plastid	85.13	84.93
AT5G15710.2	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, plastid, vacuole	83.75	81.7
KRH01425	Soybean	cytosol	82.84	80.09
Bra006317.1-P	Field mustard	cytosol, plastid	79.63	80.0
CDX78648	Canola	cytosol, plastid	79.41	79.77
CDX70633	Canola	cytosol, plastid	78.95	79.49
Os04t0668600-01	Rice	plastid	67.73	70.48
EES11618	Sorghum	plastid	66.36	68.72
Zm00001d026557_P001	Maize	cytosol, mitochondrion, plastid	65.9	68.57
Zm00001d026558_P001	Maize	cytosol, mitochondrion, plastid	65.9	68.57
TraesCS2D01G541700.1	Wheat	mitochondrion	63.39	67.4
HORVU2Hr1G118340.2	Barley	cytosol	53.32	62.13
VIT_01s0010g03730.t01	Wine grape	cytosol	25.4	24.4
VIT_01s0011g01220.t01	Wine grape	plastid	24.26	24.31
VIT_15s0046g01540.t01	Wine grape	cytosol	22.88	24.21
VIT_02s0025g00830.t01	Wine grape	cytosol	21.05	22.66
VIT_04s0008g03190.t01	Wine grape	cytosol	19.22	20.64
VIT_18s0001g09110.t01	Wine grape	plasma membrane	22.88	19.19

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100249730	wikigene:100249730	MapMan:19.2.2.8.1.4.6	Gene3D:2.120.10.80	EMBL:AM458023
ProteinID:CAN83202	ProteinID:CAN83202.1	ProteinID:CBI16913	ProteinID:CBI16913.3	UniProt:D7SML5	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	EMBL:FN594955	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031146	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	EntrezGene:LOC100249730	wikigene:LOC100249730	PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR45291
SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI00015C8FD6	ArrayExpress:VIT_14s0083g00810	EnsemblPlantsGene:VIT_14s0083g00810
EnsemblPlants:VIT_14s0083g00810.t01	RefSeq:XP_002278501	RefSeq:XP_002278501.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr14:+:23017927..23019683

Molecular Weight (calculated)

49750.1 Da

IEP (calculated)

8.750

GRAVY (calculated)

-0.163

Length

437 amino acids

Sequence
(BLAST)

001: MDGIGGSSES GSGEIGPQLS RNGFYREEES CVKHVSALGG GGSRNTSPLG RVGSRNTSPS RQKVIKTPRG LDEETVTTFG KAVQPDVQME DNIWAMLPED
101: LLIEILARVP PFMIFRLRSV CKRWNSILLD SSFLKFHSQV PSHGPCLLTF WKNSQTPQCS VFSLPLKTWY RIPFTFLPSW AFWLVGSSGG LVCFSGLDGL
201: TFKTLVCNPL TQRWQTLPSM HHNQQRQLIM VVDRTDRSFK VIATSDIYGD KSLPTEVYDS KLNSWSLHQI MPAVNLCSSK MAFCDSRLYL ETLSPLGLMM
301: YRLDTGYWEH IPAKFPRSLL DGYLVAGTQK RLFLVGRIGL YSTLQSMRIW ELDHAKFMWV EMSRMPPKYF RALLRLSAER FECFGQDNLI CFTSWNQGKG
401: LLYDVDKKVW SWIAGCALQS YNSQVCFYEP RFDASIY

Best Arabidopsis Sequence Match ( AT5G15710.2 )
(BLAST)

001: MERLGFWGLL MGSVEKSLDS GNSLACSASA KNGDEESSTS SKQVSPLKGS GSRNTSPLGR VGSRNTSPSR QKVVKTKPRG LEEETVASFG KQVVADVQME
101: DGIWAMLPED LLNEILARVP PFMIFRIRSV CKKWNLILQD NSFLKFHSNV SSHGPCLLTF WKNSPQIPQC SVFSLPLKTW YKIPFTFLPP WAFWLVGSSG
201: GLVCFSGLDG LTFRTLVCNP LMQSWRTLPS MHYNQQRQLI MVVDRSDKSF KVIATSDIYG DKSLPTEVYD SKTDKWSLHQ IMPAVNLCSS KMAYCDSRLY
301: LETLSPLGLM MYRLDSGQWE HIPAKFPRSL LDGYLVAGTQ KRLFLVGRIG LYSTLQSMRI WELDHTKVSW VEISRMPPKY FRALLRLSAE RFECFGQDNL
401: ICFTSWNQGK GLLYNVDKKI WSWISGCALQ SCNSQVCFYE PRFDASVL

Arabidopsis Description

F-box/kelch-repeat protein At5g15710 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFV5]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.