Factsheet for VIT_18s0001g09110.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
plastid 3
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g06410.t01
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43190.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166
AT5G43190.1	VIT_18s0001g14860.t01	AT5G42190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027543	Potato	cytosol	43.57	59.58
KRH61403	Soybean	plastid	39.54	57.38
KRH15449	Soybean	cytosol, mitochondrion, nucleus	42.61	57.22
KRH52086	Soybean	plastid	36.08	54.02
Bra027473.1-P	Field mustard	plastid	36.08	52.66
CDY32964	Canola	plastid	37.43	48.99
AT5G43190.1	Thale cress	mitochondrion	37.81	48.88
CDY43599	Canola	plastid	37.62	48.64
VIT_14s0083g00810.t01	Wine grape	cytosol	19.19	22.88
VIT_04s0008g03190.t01	Wine grape	cytosol	16.51	21.13
VIT_01s0010g03730.t01	Wine grape	cytosol	18.43	21.1
VIT_15s0046g01540.t01	Wine grape	cytosol	16.51	20.82
VIT_02s0025g00830.t01	Wine grape	cytosol	16.12	20.69
VIT_01s0011g01220.t01	Wine grape	plastid	17.27	20.64

Protein Annotations

Gene3D:1.10.10.670	Gene3D:1.20.1280.50	EntrezGene:100260898	wikigene:100260898	Gene3D:2.120.10.80	MapMan:35.1
ProteinID:CBI19402	ProteinID:CBI19402.3	UniProt:E0CP24	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	EMBL:FN595227
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006091	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009521	GO:GO:0009579	GO:GO:0009767	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016168	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0019684
GO:GO:0031146	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	EntrezGene:LOC100260898
wikigene:LOC100260898	PFAM:PF00421	PFAM:PF00646	PFscan:PS50181	InterPro:PS_II_antenna-like_sf	InterPro:PS_antenna-like
PANTHER:PTHR44829	SMART:SM00256	SUPFAM:SSF161077	SUPFAM:SSF50965	SUPFAM:SSF81383	UniParc:UPI0001BE1229
ArrayExpress:VIT_18s0001g09110	EnsemblPlantsGene:VIT_18s0001g09110	EnsemblPlants:VIT_18s0001g09110.t01	RefSeq:XP_002285319	RefSeq:XP_002285319.1	SEG:seg

Description

No Description!

Coordinates

chr18:+:7580653..7584190

Molecular Weight (calculated)

58932.0 Da

IEP (calculated)

7.644

GRAVY (calculated)

0.081

Length

521 amino acids

Sequence
(BLAST)

001: MIRVGSTFQA MEKLFGFIAC CFVWFNNAAY PSEFYGPTRP EASQPQAFTF LVRDQHLGAN VGSAQGPTGL GKYLMHSPTR EVIFRRETMR FWDLHAPWLE
101: PLRGPNGLDL SRLKKNRRQI DIGFSWCNRV SIYLTDMAAR AGKSQEMDPG IWGHLPVELL EHVLSFLPLK SFFNLLCTCK RFKSLIYSPS FLAKYSPSSS
201: SSSSSPALSS FLLLSHPQFY RHRLPLYDSA IGNWRNLSLT CSILLPYAAT TAITLLSAAN GLLCFSLPNS SSFLVCNLLV GSSRVLQFPG YPFAFEMLTL
301: VPAPDGYKIF MIASGSSSNN AWVYDSGVHS WREFQGFDPT LSDNCHQGVY CNGVLYFCTS EPFSIVCFDL ESGVWDRSVV ELPGELTFVK LVSDGEGKLY
401: LVGGIGRNGI SKSMKLWELE GENWVLVESL PEFMCQKLVS VCYHNYEHVY CFWHQETICV CCYTWPEILY YKVARRTWHW LPKCPSLPDK WSCGFRWFSF
501: VPELYAQCGC LPSVLLVASL L

Best Arabidopsis Sequence Match ( AT5G43190.1 )
(BLAST)

001: MFRLRAHGKK PITITTTTTT TASTFLYWSP ESSPTALSSP TNLDPNIWSN LPNHLLEHIL SLLPFKTLLT LRSISRHLRS LILSPSFISD HSFSLPSFLL
101: LSHPQSFNSF PLFNPNLISW CTLPLPRSLS LTCASSLLSS SNGLLCFSLS PSSVSSLSIF NPLTRSSRSI KLPCYPFPFE LLSLVTSPKG YKIFTLCSSS
201: SAASSRSVCL YDSGDRSWRK FGGVDQVLPR GFNQDGVFYN GSLYFARSEP FLIVSVDLND GKWTTATGDG VFPADDEITF ARLVSDPEKK ILYMVGGIGS
301: NGICRSIKIW EFKEETESWI EVETLPDIVC RKFTSVCYHN YEHVYCLWHK EMICVCCYNW PEILFFHVGR RTWHWVPKCP SLPEKWSCGF RWFSFVPSLS
401: ASV

Arabidopsis Description

F-box/kelch-repeat protein At5g43190 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.