Factsheet for VIT_01s0011g01220.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01
VIT_12s0035g01450.t01
VIT_12s0055g00390.t01
VIT_15s0048g01980.t01
VIT_18s0001g12250.t01
VIT_18s0001g13460.t01
VIT_18s0001g14860.t01	nucleus
VIT_19s0015g01950.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30950.1	VIT_03s0038g04360.t01	AT1G22920.1	12724534
AT1G30950.1	VIT_18s0001g13460.t01	AT3G54340.1	18287201
AT1G30950.1	VIT_15s0048g01980.t01	AT3G61140.1	12724534
AT1G30950.1	VIT_12s0055g00390.t01	AT4G14110.1	12724534
AT1G30950.1	VIT_18s0001g14860.t01	AT5G42190.1	10607296
AT1G30950.1	VIT_18s0001g14860.t01	AT5G42190.1	12169662
AT1G30950.1	VIT_18s0001g14860.t01	AT5G42190.1	12795696
AT1G30950.1	VIT_18s0001g14860.t01	AT5G42190.1	23226441
AT1G30950.1	VIT_12s0035g01450.t01	AT5G42970.1	12724534
AT1G30950.1	VIT_18s0001g12250.t01	AT5G42970.1	12724534
AT1G30950.1	VIT_19s0015g01950.t01	AT5G56280.1	12724534

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58532	Soybean	plastid	72.94	73.95
KRH42420	Soybean	plastid	72.25	71.59
PGSC0003DMT400045739	Potato	plastid	71.79	68.34
Solyc02g081670.1.1	Tomato	plastid	71.1	68.13
AT1G30950.1	Thale cress	plastid	67.2	66.29
Bra039878.1-P	Field mustard	plastid	66.28	64.94
CDY52183	Canola	plastid	66.28	64.8
CDY12448	Canola	plastid	65.83	64.35
GSMUA_Achr3P23630_001	Banana	plastid	50.23	57.33
Os06t0665400-01	Rice	plastid	42.89	43.59
HORVU7Hr1G108970.1	Barley	cytosol, plasma membrane, plastid	43.58	43.38
TraesCS7A01G481600.1	Wheat	plastid	43.58	43.18
TraesCS7D01G468700.1	Wheat	plastid	43.35	42.95
OQU76836	Sorghum	plastid	41.51	42.0
Zm00001d046950_P001	Maize	cytosol, mitochondrion, plastid	41.51	41.8
Zm00001d036653_P001	Maize	plastid	41.74	41.74
TraesCS7B01G384000.1	Wheat	extracellular, plasma membrane, plastid	43.12	38.92
VIT_14s0083g00810.t01	Wine grape	cytosol	24.31	24.26
VIT_15s0046g01540.t01	Wine grape	cytosol	20.64	21.79
VIT_02s0025g00830.t01	Wine grape	cytosol	20.18	21.67
VIT_04s0008g03190.t01	Wine grape	cytosol	20.18	21.62
VIT_01s0010g03730.t01	Wine grape	cytosol	22.48	21.54
VIT_18s0001g09110.t01	Wine grape	plasma membrane	20.64	17.27

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100262784	wikigene:100262784	MapMan:19.2.2.8.1.4.3	EMBL:AM455752	ProteinID:CAN83132
ProteinID:CAN83132.1	ProteinID:CCB51034	ProteinID:CCB51034.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F6HFT8
EMBL:FN595752	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0006139	GO:GO:0006355	GO:GO:0006464	GO:GO:0008134	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0031146	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	EntrezGene:LOC100262784	wikigene:LOC100262784	PFAM:PF00646
PFscan:PS50181	PANTHER:PTHR45371	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	UniParc:UPI00015C749F
ArrayExpress:VIT_01s0011g01220	EnsemblPlantsGene:VIT_01s0011g01220	EnsemblPlants:VIT_01s0011g01220.t01	RefSeq:XP_002275773	RefSeq:XP_002275773.1	SEG:seg

Description

No Description!

Coordinates

chr1:+:1060701..1062011

Molecular Weight (calculated)

48429.0 Da

IEP (calculated)

8.782

GRAVY (calculated)

-0.038

Length

436 amino acids

Sequence
(BLAST)

001: MDAFNTPITL PMSYSFTSSG GSTSSGTAAN TNINPWMDSR IWSKLPQRLI DRVIAFLPPP DFFRARAVCK RWYGLLFSSS FLELYLQISP RRHWFLFFKH
101: KSLKSYIYRN SGGGSDRANC EGYLFDPYSN SWYRLSFSLI PSGFSPASSS GGLICWVSDE AGPKGLFLCN PLVGSLSQLP PTLRPRLFPS IGLTVTPSSI
201: DVAVAGDDLI SPYAVKNLTT ESFHIDGGGF YSIWGTTSSL PRLCSLESGR MVHVQGRFYC MNYSPFSVLA YDIAANNWWK IQAPMRRFLR SPSLVESRGR
301: LILVATVEKS KLNVPKSLRI WGLQACGTTW VEIERMPQQL YLQFAEVEGS QGFDCVGHGE FIAIMIRGSD KALLFNIYGK TWQWIPPCPF LSGSGGSSSS
401: SGEGCELHGF AYEPRLATPV TTLLDQLTLP FQPFNG

Best Arabidopsis Sequence Match ( AT1G30950.1 )
(BLAST)

001: MDSTVFINNP SLTLPFSYTF TSSSNSSTTT STTTDSSSGQ WMDGRIWSKL PPPLLDRVIA FLPPPAFFRT RCVCKRFYSL LFSNTFLETY LQLLPLRHNC
101: FLFFKHKTLK SYIYKRGGTN DDDSNKAEGF LFDPNEIRWY RLSFAYIPSG FYPSGSSGGL VSWVSEEAGL KTILLCNPLV GSVSQLPPIS RPRLFPSIGL
201: SVTPTSIDVT VAGDDLISPY AVKNLSSESF HVDAGGFFSL WAMTSSLPRL CSLESGKMVY VQGKFYCMNY SPFSVLSYEV TGNRWIKIQA PMRRFLRSPS
301: LLESKGRLIL VAAVEKSKLN VPKSLRLWSL QQDNATWVEI ERMPQPLYTQ FAAEEGGKGF ECVGNQEFVM IVLRGTSLQL LFDIVRKSWL WVPPCPYSGS
401: GGGSSGGGSD GEVLQGFAYD PVLTTPVVSL LDQLTLPFPG VC

Arabidopsis Description

UFOUncharacterized protein At1g30950 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUY4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.