CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67853
CDX68112	nucleus
CDX71533
CDX73212	nucleus
CDX73487
CDX76152
CDX80590	nucleus
CDX85931	nucleus
CDX87650	nucleus
CDX89042	nucleus
CDX90932
CDX96963
CDY01192
CDY01389	nucleus, nucleus
CDY02426
CDY04768
CDY12369
CDY12734
CDY13200
CDY13521	nucleus
CDY14922
CDY18013
CDY21400
CDY21896
CDY22060
CDY22374
CDY25761
CDY27125
CDY29370	nucleus, nucleus
CDY32798
CDY39073	nucleus
CDY43408	nucleus, nucleus
CDY44209	nucleus, nucleus
CDY45683
CDY49389
CDY52333
CDY61016
CDY63159	nucleus, nucleus
CDY65304
CDY67544	nucleus, nucleus
CDY68971	nucleus, nucleus
CDY69121	nucleus
CDY69833

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30950.1	CDY01389	AT1G20140.1	23226441
AT1G30950.1	CDY29370	AT1G20140.1	23226441
AT1G30950.1	CDY43408	AT1G20140.1	23226441
AT1G30950.1	CDY44209	AT1G20140.1	23226441
AT1G30950.1	CDY63159	AT1G20140.1	23226441
AT1G30950.1	CDY67544	AT1G20140.1	23226441
AT1G30950.1	CDY68971	AT1G20140.1	23226441
AT1G30950.1	CDY04768	AT1G22920.1	12724534
AT1G30950.1	CDY21400	AT1G22920.1	12724534
AT1G30950.1	CDY25761	AT1G22920.1	12724534
AT1G30950.1	CDX68112	AT1G75950.1	12169662
AT1G30950.1	CDX73212	AT1G75950.1	12169662
AT1G30950.1	CDX80590	AT1G75950.1	12169662
AT1G30950.1	CDX85931	AT1G75950.1	12169662
AT1G30950.1	CDX87650	AT1G75950.1	12169662
AT1G30950.1	CDY13521	AT1G75950.1	12169662
AT1G30950.1	CDY39073	AT1G75950.1	12169662
AT1G30950.1	CDX68112	AT1G75950.1	12724534
AT1G30950.1	CDX73212	AT1G75950.1	12724534
AT1G30950.1	CDX80590	AT1G75950.1	12724534
AT1G30950.1	CDX85931	AT1G75950.1	12724534
AT1G30950.1	CDX87650	AT1G75950.1	12724534
AT1G30950.1	CDY13521	AT1G75950.1	12724534
AT1G30950.1	CDY39073	AT1G75950.1	12724534
AT1G30950.1	CDX68112	AT1G75950.1	12795696
AT1G30950.1	CDX73212	AT1G75950.1	12795696
AT1G30950.1	CDX80590	AT1G75950.1	12795696
AT1G30950.1	CDX85931	AT1G75950.1	12795696
AT1G30950.1	CDX87650	AT1G75950.1	12795696
AT1G30950.1	CDY13521	AT1G75950.1	12795696
AT1G30950.1	CDY39073	AT1G75950.1	12795696
AT1G30950.1	CDX68112	AT1G75950.1	12826617
AT1G30950.1	CDX73212	AT1G75950.1	12826617
AT1G30950.1	CDX80590	AT1G75950.1	12826617
AT1G30950.1	CDX85931	AT1G75950.1	12826617
AT1G30950.1	CDX87650	AT1G75950.1	12826617
AT1G30950.1	CDY13521	AT1G75950.1	12826617
AT1G30950.1	CDY39073	AT1G75950.1	12826617
AT1G30950.1	CDX68112	AT1G75950.1	15749712
AT1G30950.1	CDX73212	AT1G75950.1	15749712
AT1G30950.1	CDX80590	AT1G75950.1	15749712
AT1G30950.1	CDX85931	AT1G75950.1	15749712
AT1G30950.1	CDX87650	AT1G75950.1	15749712
AT1G30950.1	CDY13521	AT1G75950.1	15749712
AT1G30950.1	CDY39073	AT1G75950.1	15749712
AT1G30950.1	CDX68112	AT1G75950.1	23226441
AT1G30950.1	CDX73212	AT1G75950.1	23226441
AT1G30950.1	CDX80590	AT1G75950.1	23226441
AT1G30950.1	CDX85931	AT1G75950.1	23226441
AT1G30950.1	CDX87650	AT1G75950.1	23226441
AT1G30950.1	CDY13521	AT1G75950.1	23226441
AT1G30950.1	CDY39073	AT1G75950.1	23226441
AT1G30950.1	CDX96963	AT2G03160.1	12795696
AT1G30950.1	CDY14922	AT2G03160.1	12795696
AT1G30950.1	CDX96963	AT2G03170.1	12795696
AT1G30950.1	CDY14922	AT2G03170.1	12795696
AT1G30950.1	CDY01389	AT2G25700.1	23226441
AT1G30950.1	CDY29370	AT2G25700.1	23226441
AT1G30950.1	CDY43408	AT2G25700.1	23226441
AT1G30950.1	CDY44209	AT2G25700.1	23226441
AT1G30950.1	CDY63159	AT2G25700.1	23226441
AT1G30950.1	CDY67544	AT2G25700.1	23226441
AT1G30950.1	CDY68971	AT2G25700.1	23226441
AT1G30950.1	CDX89042	AT3G21850.1	23226441
AT1G30950.1	CDY69121	AT3G21850.1	23226441
AT1G30950.1	CDX73487	AT3G54340.1	18287201
AT1G30950.1	CDX76152	AT3G54340.1	18287201
AT1G30950.1	CDY13200	AT3G54340.1	18287201
AT1G30950.1	CDY69833	AT3G54340.1	18287201
AT1G30950.1	CDX67853	AT3G61140.1	12724534
AT1G30950.1	CDY45683	AT3G61140.1	12724534
AT1G30950.1	CDY52333	AT3G61140.1	12724534
AT1G30950.1	CDY65304	AT3G61140.1	12724534
AT1G30950.1	CDX90932	AT4G02570.1	12724534
AT1G30950.1	CDY18013	AT4G02570.1	12724534
AT1G30950.1	CDY21896	AT4G02570.1	12724534
AT1G30950.1	CDY22060	AT4G02570.1	12724534
AT1G30950.1	CDY01192	AT4G14110.1	12724534
AT1G30950.1	CDY12369	AT4G14110.1	12724534
AT1G30950.1	CDY12734	AT4G14110.1	12724534
AT1G30950.1	CDY27125	AT4G14110.1	12724534
AT1G30950.1	CDX71533	AT5G42970.1	12724534
AT1G30950.1	CDY02426	AT5G42970.1	12724534
AT1G30950.1	CDY22374	AT5G42970.1	12724534
AT1G30950.1	CDY61016	AT5G42970.1	12724534
AT1G30950.1	CDY32798	AT5G56280.1	12724534
AT1G30950.1	CDY49389	AT5G56280.1	12724534

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52183	Canola	plastid	99.1	99.1
Bra039878.1-P	Field mustard	plastid	98.21	98.43
AT1G30950.1	Thale cress	plastid	91.48	92.31
KRH58532	Soybean	plastid	64.57	66.98
VIT_01s0011g01220.t01	Wine grape	plastid	64.35	65.83
KRH42420	Soybean	plastid	63.23	64.09
Solyc02g081670.1.1	Tomato	plastid	58.52	57.36
PGSC0003DMT400045739	Potato	plastid	58.52	56.99
GSMUA_Achr3P23630_001	Banana	plastid	43.95	51.31
Os06t0665400-01	Rice	plastid	41.03	42.66
HORVU7Hr1G108970.1	Barley	cytosol, plasma membrane, plastid	41.26	42.01
TraesCS7A01G481600.1	Wheat	plastid	41.03	41.59
OQU76836	Sorghum	plastid	40.13	41.53
Zm00001d046950_P001	Maize	cytosol, mitochondrion, plastid	40.13	41.34
TraesCS7D01G468700.1	Wheat	plastid	40.58	41.14
Zm00001d036653_P001	Maize	plastid	39.91	40.83
TraesCS7B01G384000.1	Wheat	extracellular, plasma membrane, plastid	40.81	37.68
CDX78648	Canola	cytosol, plastid	23.99	24.6
CDX70633	Canola	cytosol, plastid	23.77	24.42
CDY52009	Canola	nucleus	21.52	23.59
CDY53910	Canola	cytosol	21.3	23.28
CDX89124	Canola	cytosol	21.3	23.23
CDY43939	Canola	cytosol	21.08	22.54
CDX71729	Canola	mitochondrion	21.3	21.4
CDY32964	Canola	plastid	18.83	21.11
CDY11364	Canola	cytosol, golgi, nucleus	21.3	20.88
CDY43599	Canola	plastid	18.83	20.84
CDY03911	Canola	nucleus, plastid	21.08	20.43
CDY15715	Canola	nucleus, plastid	21.08	20.26
CDY27608	Canola	nucleus	21.08	20.22
CDX75335	Canola	nucleus	18.39	20.1
CDX72391	Canola	cytosol	17.71	20.0
CDX68951	Canola	cytosol	18.39	19.95
CDX84930	Canola	cytosol, plastid	20.85	19.91
CDY71979	Canola	cytosol	17.04	19.29

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.3	Gene3D:2.120.10.80	UniProt:A0A078FJZ9	EnsemblPlants:CDY12448	ProteinID:CDY12448
ProteinID:CDY12448.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00061726001	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PFAM:PF00646	PFscan:PS50181
PANTHER:PTHR45371	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EF01CC	SEG:seg

Description

BnaC08g09370DBnaC08g09370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJZ9]

Coordinates

chrLK032022:-:618082..619422

Molecular Weight (calculated)

49385.6 Da

IEP (calculated)

8.774

GRAVY (calculated)

0.006

Length

446 amino acids

Sequence
(BLAST)

001: MERNMFITNP SAHLPFSYTF TSSSNSSTTT STTTDSTSGQ WMDGRIWSKL PPSLLDRIIA FLPPPAFFRS RCVCKRFYGL LFSNTFLEIY LQLLPPRHNC
101: FLFFKHKTLK SYIYKRGGGG GANDDGSNKA EGFLFDPNEI RWYRLSFPYI PSGFYPSGSS GGLVSWVSEE AGLKTILLCN PLVGSVSQLP PMSRPRLFPS
201: IGLSVTPTSI DVTVAGDDLI SPYAVKNLSS ESFHVDAGGF FSLWAMVSSL PRLCSLESGK MVYVGGKFYC MNYSPFSVLC YEVTGNRWIK IQAPMRRFLR
301: SPSLLESKGR LVLVAAVEKS KLNVPKSLRL WSLQQDNATW VEIERMPQPL YTQFAVEEGG KGFECVGNQE FVMIVLRRAS LQLLFDMVRK SWLWVPPCPY
401: SGGSSSGVGS GGSEGEVLQG FAYDPVLTTP VVSLLDQLAL PFPGAC

Best Arabidopsis Sequence Match ( AT1G30950.1 )
(BLAST)

001: MDSTVFINNP SLTLPFSYTF TSSSNSSTTT STTTDSSSGQ WMDGRIWSKL PPPLLDRVIA FLPPPAFFRT RCVCKRFYSL LFSNTFLETY LQLLPLRHNC
101: FLFFKHKTLK SYIYKRGGTN DDDSNKAEGF LFDPNEIRWY RLSFAYIPSG FYPSGSSGGL VSWVSEEAGL KTILLCNPLV GSVSQLPPIS RPRLFPSIGL
201: SVTPTSIDVT VAGDDLISPY AVKNLSSESF HVDAGGFFSL WAMTSSLPRL CSLESGKMVY VQGKFYCMNY SPFSVLSYEV TGNRWIKIQA PMRRFLRSPS
301: LLESKGRLIL VAAVEKSKLN VPKSLRLWSL QQDNATWVEI ERMPQPLYTQ FAAEEGGKGF ECVGNQEFVM IVLRGTSLQL LFDIVRKSWL WVPPCPYSGS
401: GGGSSGGGSD GEVLQGFAYD PVLTTPVVSL LDQLTLPFPG VC

Arabidopsis Description

UFOUncharacterized protein At1g30950 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUY4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.