CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014429.1-P	Field mustard	cytosol	100.0	97.15
CDY43939	Canola	cytosol	96.33	94.48
CDY52009	Canola	nucleus	87.04	87.47
CDY53910	Canola	cytosol	86.31	86.52
CDX71729	Canola	mitochondrion	89.24	82.21
CDY11364	Canola	cytosol, golgi, nucleus	89.73	80.66
AT3G61590.4	Thale cress	plasma membrane	85.57	78.3
Solyc01g095370.2.1	Tomato	cytosol	66.75	67.57
PGSC0003DMT400000251	Potato	cytosol	66.75	67.41
KRH68853	Soybean	cytosol	63.81	64.76
KRG97101	Soybean	cytosol	63.57	64.2
VIT_02s0025g00830.t01	Wine grape	cytosol	62.1	62.56
GSMUA_Achr9P05330_001	Banana	cytosol	60.88	61.94
KRH47995	Soybean	cytosol	39.85	60.59
GSMUA_Achr6P14190_001	Banana	cytosol	54.28	58.42
GSMUA_Achr3P03450_001	Banana	cytosol	52.81	58.22
GSMUA_Achr7P10710_001	Banana	cytosol	53.3	58.13
GSMUA_Achr10P...	Banana	cytosol	53.06	57.11
Zm00001d043989_P001	Maize	cytosol	55.26	56.22
EES01202	Sorghum	cytosol	55.26	55.66
KXG29968	Sorghum	cytosol	55.5	55.64
TraesCS3D01G239300.1	Wheat	cytosol	54.28	55.22
TraesCS3B01G267600.1	Wheat	cytosol	54.28	55.22
HORVU3Hr1G059460.1	Barley	cytosol	54.03	54.98
TraesCS3A01G239100.1	Wheat	cytosol	53.79	54.73
Zm00001d053358_P001	Maize	cytosol	54.03	54.57
Os02t0260200-01	Rice	cytosol, endoplasmic reticulum	54.03	54.17
Zm00001d016066_P001	Maize	cytosol	54.52	53.73
Os01t0659900-01	Rice	cytosol	53.79	53.53
GSMUA_Achr8P27920_001	Banana	golgi, mitochondrion, plasma membrane, plastid	54.52	41.45
CDY32964	Canola	plastid	22.49	23.12
CDY43599	Canola	plastid	22.49	22.83
CDX70633	Canola	cytosol, plastid	24.21	22.81
CDX78648	Canola	cytosol, plastid	24.21	22.76
CDY12448	Canola	plastid	23.23	21.3
CDX84930	Canola	cytosol, plastid	24.21	21.2
CDY15715	Canola	nucleus, plastid	23.96	21.12
CDY52183	Canola	plastid	22.98	21.08
CDY03911	Canola	nucleus, plastid	23.47	20.87
CDY27608	Canola	nucleus	23.72	20.86
CDX75335	Canola	nucleus	20.78	20.83
CDX68951	Canola	cytosol	20.54	20.44
CDY71979	Canola	cytosol	18.83	19.54
CDX72391	Canola	cytosol	18.83	19.49

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:2.120.10.80	EnsemblPlants:CDX89124	ProteinID:CDX89124	ProteinID:CDX89124.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00149265001
InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PFAM:PF12937	PFscan:PS50181
PANTHER:PTHR10706	PANTHER:PTHR10706:SF138	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	UniParc:UPI0004EE6547
SEG:seg	:	:	:	:	:

Description

BnaA04g00620D

Coordinates

chrLK031857:+:1168225..1170615

Molecular Weight (calculated)

46701.5 Da

IEP (calculated)

5.746

GRAVY (calculated)

-0.270

Length

409 amino acids

Sequence
(BLAST)

001: MEAETSWTTY PYNYMTTYIP EAESYSEQSD DDEETKLQTF AMDSLLPNDL LERILSFLPI ASIFRAGTVC KRWNEIVSSQ RFLWNFSNNN NNNSVSQGPW
101: YFMFTTTDDP SGYAYDPVIK KWYSFDLPCI ETSNWFIASS CGLVCFMDND CRSKIYVSNP ITKQWRRLIE PPGHKATDYT ALSTSMNRAK QSYSVSIVKS
201: KQVAGDFFQW DLSIHLYSSE TMTWTTSVTD VLTGWRGGDE SVICNNVLYF LIYTTGGNSD HRHGLIASNL SSSTSSLMRS FIPMPCALTC GRLMNLKERL
301: VVVGGIGKHD RPEIIKGIGI WCLKGGREWQ EMARMPQRFF QGFGELDDVF ASSGSDDLVY IQSYGSPALL MFDMKLKCWK WSQKCPVSKK FPLQLFTGFC
401: FEPRLEITP

Best Arabidopsis Sequence Match ( AT3G61590.4 )
(BLAST)

001: MLDKVLILSL FFVFCIFDLP LCMYAKANLI DKRLLRMEAE TSWTNYPYSY ITYVPEAESY REQSDDEAKV ETFSMDSLLP DDLLERILSF LPIASIFRAG
101: TVCKRWNEIV SSRRFLCNFS NNSVSQRPWY FMFTTTDDPS GYAYDPIIRK WYSFDLPCIE TSNWFVASSC GLVCFMDNDC RNKIYVSNPI TKQWRTLIEP
201: PGHKSTDYTA MSTSVNRANQ AVNRANRSYS VSIVKSKQVP GNFFQWDLSI HLYSSETMTW TTLVNDVLSG WRGGNESVIC NNVLYFMIYS TGGSDHRHGL
301: IASNLSSIGS PSSGILMRSF IPMPCSLTCG RLMNLRERLV IVGGIGKHDR PEVIKGIGIW VLKGKEWVEM AKMPQRFFQG FGEFDEVFAS SGTDDLVYIQ
401: SYGSPALLTF DMNLKYWRWS QKCPVTKKFP LQLFTGFCFE PRLEIAP

Arabidopsis Description

HWSGalactose oxidase/kelch repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRL4]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.