CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43190.1	CDY03088	AT2G01950.1	19000166
AT5G43190.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32964	Canola	plastid	97.52	98.74
Bra027473.1-P	Field mustard	plastid	87.1	98.32
AT5G43190.1	Thale cress	mitochondrion	87.59	87.59
PGSC0003DMT400027543	Potato	cytosol	46.9	49.61
KRH61403	Soybean	plastid	44.17	49.58
KRH15449	Soybean	cytosol, mitochondrion, nucleus	45.91	47.68
KRH52086	Soybean	plastid	39.95	46.26
VIT_18s0001g09110.t01	Wine grape	plasma membrane	48.64	37.62
CDY52009	Canola	nucleus	22.83	22.6
CDX89124	Canola	cytosol	22.83	22.49
CDY53910	Canola	cytosol	22.33	22.06
CDY43939	Canola	cytosol	22.33	21.58
CDX70633	Canola	cytosol, plastid	22.33	20.74
CDX78648	Canola	cytosol, plastid	22.33	20.69
CDX71729	Canola	mitochondrion	21.84	19.82
CDY11364	Canola	cytosol, golgi, nucleus	22.08	19.56
CDY12448	Canola	plastid	20.84	18.83
CDY52183	Canola	plastid	20.84	18.83
CDX72391	Canola	cytosol	17.87	18.23
CDX68951	Canola	cytosol	18.11	17.76
CDY15715	Canola	nucleus, plastid	20.35	17.67
CDX75335	Canola	nucleus	17.87	17.65
CDY71979	Canola	cytosol	17.12	17.51
CDY27608	Canola	nucleus	20.1	17.42
CDY03911	Canola	nucleus, plastid	19.6	17.17
CDX84930	Canola	cytosol, plastid	19.6	16.92

Protein Annotations

EnsemblPlants:CDY43599	EnsemblPlantsGene:GSBRNA2T00076911001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	PANTHER:PTHR44829	PFAM:PF00646
PFscan:PS50181	ProteinID:CDY43599	ProteinID:CDY43599.1	SEG:seg	SMART:SM00256	SUPFAM:SSF50965
SUPFAM:SSF81383	UniParc:UPI0004EDD1C3	UniProt:A0A078I1X3	MapMan:35.1	:	:

Description

BnaC09g17380DBnaC09g17380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I1X3]

Coordinates

chrLK032562:-:81988..83199

Molecular Weight (calculated)

45575.6 Da

IEP (calculated)

8.296

GRAVY (calculated)

0.057

Length

403 amino acids

Sequence
(BLAST)

001: MFRLRAPGKK PITITTPTTS TSASNFLYWS PESSPTAVSS PTAMDPIIWS NLPNHILDHI LSFLPFKTLV SLRSTSKHLR SLILSPTFLS DHSFSLPSFL
101: LLSHPQAFQS FPLFDPNLIS WRTLPLPRSL SLTCASSLLS SSHGLLCFSV SPSSASSLSV FNPLTRSSRF IKFPFYPFPF ELLSLVAFPD SYRIFTISSS
201: SSSTSRSVCL YDSGDRSWRI FGGVDQVLPR GFNQDGVFYN GSLYFVRSEP FLLVSVNLDD GKWTTATGDG VFPAEDEITF ARLVTDPEKK ILYMVGGIGS
301: NGICRSIKIY EFKRETESWI EAETLPDIVC RKFTSVCYHN YEHVYCLWHK EMICVCCYNW PEILFFHVGR RTWHWVPKCP SLPEKWSCGF RWFSLVPSLS
401: ASV

Best Arabidopsis Sequence Match ( AT5G43190.1 )
(BLAST)

001: MFRLRAHGKK PITITTTTTT TASTFLYWSP ESSPTALSSP TNLDPNIWSN LPNHLLEHIL SLLPFKTLLT LRSISRHLRS LILSPSFISD HSFSLPSFLL
101: LSHPQSFNSF PLFNPNLISW CTLPLPRSLS LTCASSLLSS SNGLLCFSLS PSSVSSLSIF NPLTRSSRSI KLPCYPFPFE LLSLVTSPKG YKIFTLCSSS
201: SAASSRSVCL YDSGDRSWRK FGGVDQVLPR GFNQDGVFYN GSLYFARSEP FLIVSVDLND GKWTTATGDG VFPADDEITF ARLVSDPEKK ILYMVGGIGS
301: NGICRSIKIW EFKEETESWI EVETLPDIVC RKFTSVCYHN YEHVYCLWHK EMICVCCYNW PEILFFHVGR RTWHWVPKCP SLPEKWSCGF RWFSFVPSLS
401: ASV

Arabidopsis Description

F-box/kelch-repeat protein At5g43190 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.