Factsheet for Bra027473.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra024839.1-P
Bra024840.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43190.1	Bra024839.1-P	AT2G01950.1	19000166
AT5G43190.1	Bra024840.1-P	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32964	Canola	plastid	99.16	88.94
CDY43599	Canola	plastid	98.32	87.1
AT5G43190.1	Thale cress	mitochondrion	87.68	77.67
KRH61403	Soybean	plastid	49.58	49.3
PGSC0003DMT400027543	Potato	cytosol	52.38	49.08
KRH15449	Soybean	cytosol, mitochondrion, nucleus	51.54	47.42
KRH52086	Soybean	plastid	44.82	45.98
VIT_18s0001g09110.t01	Wine grape	plasma membrane	52.66	36.08
Bra003458.1-P	Field mustard	nucleus	24.65	21.57
Bra007616.1-P	Field mustard	cytosol	24.09	21.29
Bra014429.1-P	Field mustard	cytosol	24.65	20.9
Bra006317.1-P	Field mustard	cytosol, plastid	23.81	19.54
Bra039878.1-P	Field mustard	plastid	22.41	17.98
Bra030038.1-P	Field mustard	nucleus, plastid	22.97	17.75
Bra032820.1-P	Field mustard	nucleus	22.41	17.2
Bra037018.1-P	Field mustard	cytosol	18.77	17.05
Bra011423.1-P	Field mustard	nucleus	19.33	16.91

Protein Annotations

EnsemblPlants:Bra027473.1	EnsemblPlants:Bra027473.1-P	EnsemblPlantsGene:Bra027473	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	PANTHER:PTHR44829
PFAM:PF00646	PFscan:PS50181	SEG:seg	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383
UniParc:UPI0002542859	UniProt:M4EFB1	MapMan:35.1	:	:	:

Description

AT5G43190 (E=4e-159) | F-box family protein (FBX6)

Coordinates

chrA09:+:14051927..14053000

Molecular Weight (calculated)

40720.9 Da

IEP (calculated)

7.859

GRAVY (calculated)

0.107

Length

357 amino acids

Sequence
(BLAST)

001: MDPVIWSNLP NHILDHILSF LPFKTLVSLR STSKHLRSLI LSPTFLSDHS FPLPSFLLLS HPQAFQSFPL FDPNLISWRT LPLPRSLSLT CASSLLSSSH
101: GLLCFSVSPS SASSLSVFNP LTRSSRSIKF PFYPFPFELL SLVAFPDSYR IFTISSSASR SVCLYDSGDR WWRIFGGVDQ VLPRGFNQDG VFYNGSLYFV
201: RSEPFLLVSV NLDDGKWTTA AGDGVFPAED EITFARLVTD PEKKILYMVG GIGSNGICRS IKIYEFKRET ESWIEAETLP DIVCRKFTSV CYHNYEHVYC
301: LWHKEMICVC CYNWPEILFF HVGRRTWHWV PKCPSLPEKW SCGFRWFSLV PSLSASV

Best Arabidopsis Sequence Match ( AT5G43190.1 )
(BLAST)

001: MFRLRAHGKK PITITTTTTT TASTFLYWSP ESSPTALSSP TNLDPNIWSN LPNHLLEHIL SLLPFKTLLT LRSISRHLRS LILSPSFISD HSFSLPSFLL
101: LSHPQSFNSF PLFNPNLISW CTLPLPRSLS LTCASSLLSS SNGLLCFSLS PSSVSSLSIF NPLTRSSRSI KLPCYPFPFE LLSLVTSPKG YKIFTLCSSS
201: SAASSRSVCL YDSGDRSWRK FGGVDQVLPR GFNQDGVFYN GSLYFARSEP FLIVSVDLND GKWTTATGDG VFPADDEITF ARLVSDPEKK ILYMVGGIGS
301: NGICRSIKIW EFKEETESWI EVETLPDIVC RKFTSVCYHN YEHVYCLWHK EMICVCCYNW PEILFFHVGR RTWHWVPKCP SLPEKWSCGF RWFSFVPSLS
401: ASV

Arabidopsis Description

F-box/kelch-repeat protein At5g43190 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.