Factsheet for Bra003458.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53910	Canola	cytosol	98.04	98.04
Bra007616.1-P	Field mustard	cytosol	87.75	88.61
Bra014429.1-P	Field mustard	cytosol	87.25	84.56
AT3G61590.4	Thale cress	plasma membrane	82.6	75.39
Solyc01g095370.2.1	Tomato	cytosol	63.97	64.6
PGSC0003DMT400000251	Potato	cytosol	63.73	64.2
KRH68853	Soybean	cytosol	62.99	63.77
KRG97101	Soybean	cytosol	62.5	62.96
GSMUA_Achr9P05330_001	Banana	cytosol	60.54	61.44
VIT_02s0025g00830.t01	Wine grape	cytosol	60.78	61.08
KRH47995	Soybean	cytosol	39.22	59.48
GSMUA_Achr6P14190_001	Banana	cytosol	54.41	58.42
GSMUA_Achr3P03450_001	Banana	cytosol	52.94	58.22
GSMUA_Achr7P10710_001	Banana	cytosol	52.7	57.33
GSMUA_Achr10P...	Banana	cytosol	53.19	57.11
EES01202	Sorghum	cytosol	56.37	56.65
Zm00001d043989_P001	Maize	cytosol	55.64	56.47
TraesCS3A01G239100.1	Wheat	cytosol	55.39	56.22
TraesCS3D01G239300.1	Wheat	cytosol	55.39	56.22
KXG29968	Sorghum	cytosol	56.13	56.13
HORVU3Hr1G059460.1	Barley	cytosol	55.15	55.97
TraesCS3B01G267600.1	Wheat	cytosol	54.9	55.72
Zm00001d053358_P001	Maize	cytosol	54.66	55.06
Os02t0260200-01	Rice	cytosol, endoplasmic reticulum	54.66	54.66
Os01t0659900-01	Rice	cytosol	54.66	54.26
Zm00001d016066_P001	Maize	cytosol	55.15	54.22
GSMUA_Achr8P27920_001	Banana	golgi, mitochondrion, plasma membrane, plastid	53.92	40.89
Bra027473.1-P	Field mustard	plastid	21.57	24.65
Bra006317.1-P	Field mustard	cytosol, plastid	24.26	22.76
Bra039878.1-P	Field mustard	plastid	23.53	21.57
Bra011423.1-P	Field mustard	nucleus	21.08	21.08
Bra030038.1-P	Field mustard	nucleus, plastid	23.77	21.0
Bra032820.1-P	Field mustard	nucleus	23.04	20.22
Bra037018.1-P	Field mustard	cytosol	18.14	18.83

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:2.120.10.80	EnsemblPlantsGene:Bra003458	EnsemblPlants:Bra003458.1	EnsemblPlants:Bra003458.1-P
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	UniProt:M4CGX5	PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR10706
PANTHER:PTHR10706:SF138	SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0002541869	SEG:seg

Description

AT3G61590 (E=1e-196) HWS, HS | HWS (HAWAIIAN SKIRT); ubiquitin-protein ligase

Coordinates

chrA07:+:13300489..13301715

Molecular Weight (calculated)

46094.7 Da

IEP (calculated)

6.055

GRAVY (calculated)

-0.226

Length

408 amino acids

Sequence
(BLAST)

001: MEAETSWTTY PYSYITTYVP EAESYSDHSD DDETKVQTFS MDSLLPNDLL ERILTFLPIA SIFRAGTVCK RWNEIVSSQR FLSNFSNNNS APQSPWYFMF
101: TSTDDPSGYA YDPVIKKWYG FDLPCIESSN WFVASSCGLV CFMDNDCRNK IYVSNPITKQ WRRLTEPPGH RSTDYAALSA SVNRAKQSYS VSVVKSKQVQ
201: GDFFQWELSV HLYSSETMTW TTRLTDVLAG WRGGDESVIC GNVLYILIYS TGGSDHRHGL IALNLSTISS SNGVLMRSFI PMPCSLTCGR LMNLKEKLVV
301: VGGIGKQDRP DIIKGIGVWC LNGGGREWQE VARMPQRFFQ GFGELDDVFA SSGSDDMVYV QSYGSPALLT FDMKLKCWKW SQKCPVSKKF PLQLFTGFCF
401: EPRLEIAP

Best Arabidopsis Sequence Match ( AT3G61590.1 )
(BLAST)

001: MEAETSWTNY PYSYITYVPE AESYREQSDD EAKVETFSMD SLLPDDLLER ILSFLPIASI FRAGTVCKRW NEIVSSRRFL CNFSNNSVSQ RPWYFMFTTT
101: DDPSGYAYDP IIRKWYSFDL PCIETSNWFV ASSCGLVCFM DNDCRNKIYV SNPITKQWRT LIEPPGHKST DYTAMSTSVN RANQAVNRAN RSYSVSIVKS
201: KQVPGNFFQW DLSIHLYSSE TMTWTTLVND VLSGWRGGNE SVICNNVLYF MIYSTGGSDH RHGLIASNLS SIGSPSSGIL MRSFIPMPCS LTCGRLMNLR
301: ERLVIVGGIG KHDRPEVIKG IGIWVLKGKE WVEMAKMPQR FFQGFGEFDE VFASSGTDDL VYIQSYGSPA LLTFDMNLKY WRWSQKCPVT KKFPLQLFTG
401: FCFEPRLEIA P

Arabidopsis Description

HWSGalactose oxidase/kelch repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRL4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.