Factsheet for Bra006317.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78648	Canola	cytosol, plastid	99.54	99.54
CDX70633	Canola	cytosol, plastid	98.16	98.39
AT5G15710.2	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, plastid, vacuole	93.1	90.4
GSMUA_Achr1P09520_001	Banana	cytosol	67.36	83.95
VIT_14s0083g00810.t01	Wine grape	cytosol	80.0	79.63
Solyc02g089310.1.1	Tomato	cytosol, plastid	80.0	79.45
PGSC0003DMT400003737	Potato	cytosol	80.0	79.45
KRH45144	Soybean	cytosol, plastid	78.85	78.31
KRH01425	Soybean	cytosol	77.93	75.0
Os04t0668600-01	Rice	plastid	66.9	69.29
EES11618	Sorghum	plastid	65.98	68.01
Zm00001d026558_P001	Maize	cytosol, mitochondrion, plastid	64.83	67.14
Zm00001d026557_P001	Maize	cytosol, mitochondrion, plastid	64.83	67.14
TraesCS2D01G541700.1	Wheat	mitochondrion	62.3	65.94
HORVU2Hr1G118340.2	Barley	cytosol	52.18	60.53
Bra007616.1-P	Field mustard	cytosol	22.76	24.5
Bra003458.1-P	Field mustard	nucleus	22.76	24.26
Bra039878.1-P	Field mustard	plastid	24.37	23.82
Bra027473.1-P	Field mustard	plastid	19.54	23.81
Bra014429.1-P	Field mustard	cytosol	22.76	23.52
Bra030038.1-P	Field mustard	nucleus, plastid	23.45	22.08
Bra032820.1-P	Field mustard	nucleus	22.99	21.51
Bra011423.1-P	Field mustard	nucleus	19.77	21.08
Bra037018.1-P	Field mustard	cytosol	18.85	20.87

Protein Annotations

EnsemblPlants:Bra006317.1	EnsemblPlants:Bra006317.1-P	EnsemblPlantsGene:Bra006317	Gene3D:1.20.1280.50	Gene3D:2.120.10.80	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	PANTHER:PTHR45291	PFAM:PF00646	PFscan:PS50181	SEG:seg	SMART:SM00256
SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000253F57D	UniProt:M4CQ28	MapMan:19.2.2.8.1.4.6	:

Description

AT5G15710 (E=1e-223) | F-box family protein

Coordinates

chrA03:+:2981865..2983172

Molecular Weight (calculated)

49680.2 Da

IEP (calculated)

9.244

GRAVY (calculated)

-0.157

Length

435 amino acids

Sequence
(BLAST)

001: MERLGFWGLL MGSVEKSSDS RKLVTCSKNR DEESSSSSSS ASPLKRSLSR NTSPSRQIVV KTKPRGLEEE TVASFGKQVV AADVPMEESI WAMLPEDLLN
101: EILARLPPFM IFRIRSVCKK WNLILQDNSF LKFHSNVSSH GPCLLTFWKN SPQVPQCSVF SLPLKTWYKV PFTFLPSWAF WLVGSSGGLV CFSGLDGLTF
201: RTLVCNPLMQ SWRILPSMHY NQQRQLIMVV DRSEKSFKVI ATSDIYGDKS LPTEVYDSKT NKWSLHQIMP AVNLCSSKMA YCDSRLYLET LSPLGLMMYR
301: LDTGQWEHIP AKFPRSLLDG YLVAGTQKRL FLVGRIGLYS TLQSMRIWEL DHTKVSWVEI SRMPPKYFRA LLRLSAERFE CFGQDNLICF TSWNQGKGLL
401: YNVDKKIWSW ISGCALQSCN SQVCFYEPRF DASGN

Best Arabidopsis Sequence Match ( AT5G15710.2 )
(BLAST)

001: MERLGFWGLL MGSVEKSLDS GNSLACSASA KNGDEESSTS SKQVSPLKGS GSRNTSPLGR VGSRNTSPSR QKVVKTKPRG LEEETVASFG KQVVADVQME
101: DGIWAMLPED LLNEILARVP PFMIFRIRSV CKKWNLILQD NSFLKFHSNV SSHGPCLLTF WKNSPQIPQC SVFSLPLKTW YKIPFTFLPP WAFWLVGSSG
201: GLVCFSGLDG LTFRTLVCNP LMQSWRTLPS MHYNQQRQLI MVVDRSDKSF KVIATSDIYG DKSLPTEVYD SKTDKWSLHQ IMPAVNLCSS KMAYCDSRLY
301: LETLSPLGLM MYRLDSGQWE HIPAKFPRSL LDGYLVAGTQ KRLFLVGRIG LYSTLQSMRI WELDHTKVSW VEISRMPPKY FRALLRLSAE RFECFGQDNL
401: ICFTSWNQGK GLLYNVDKKI WSWISGCALQ SCNSQVCFYE PRFDASVL

Arabidopsis Description

F-box/kelch-repeat protein At5g15710 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFV5]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.