Factsheet for Bra030038.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra014519.1-P
Bra015801.1-P
Bra039504.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27340.1	Bra003735.1-P	AT1G75950.1	12795696
AT1G27340.1	Bra008231.1-P	AT1G75950.1	12795696
AT1G27340.1	Bra015801.1-P	AT1G75950.1	12795696
AT1G27340.1	Bra039504.1-P	AT2G03160.1	12795696
AT1G27340.1	Bra014519.1-P	AT3G21850.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15715	Canola	nucleus, plastid	97.62	97.2
AT1G27340.1	Thale cress	cytosol	83.98	83.08
Bra032820.1-P	Field mustard	nucleus	83.12	82.58
Solyc05g015520.2.1	Tomato	cytosol	64.5	63.95
PGSC0003DMT400084722	Potato	cytosol, mitochondrion	64.29	63.73
VIT_01s0010g03730.t01	Wine grape	cytosol	61.47	62.42
KRH31515	Soybean	cytosol	60.17	61.78
KRG97395	Soybean	cytosol	61.47	61.47
GSMUA_AchrUn_...	Banana	cytosol	50.87	61.04
KRH42677	Soybean	cytosol, nucleus, plasma membrane	56.93	58.06
KRH58777	Soybean	cytosol	56.71	57.71
EES04122	Sorghum	cytosol	54.33	56.79
Zm00001d011994_P001	Maize	cytosol	54.11	56.43
Os01t0923900-01	Rice	cytosol	53.68	55.98
TraesCS3B01G470300.2	Wheat	cytosol	53.25	55.03
TraesCS3D01G428200.2	Wheat	cytosol	53.25	55.03
TraesCS3A01G435400.2	Wheat	cytosol	53.03	54.81
Zm00001d042309_P001	Maize	cytosol	52.81	51.69
Bra011423.1-P	Field mustard	nucleus	21.64	24.51
Bra007616.1-P	Field mustard	cytosol	21.21	24.26
Bra037018.1-P	Field mustard	cytosol	20.35	23.92
Bra003458.1-P	Field mustard	nucleus	21.0	23.77
Bra006317.1-P	Field mustard	cytosol, plastid	22.08	23.45
Bra014429.1-P	Field mustard	cytosol	21.0	23.04
Bra027473.1-P	Field mustard	plastid	17.75	22.97
Bra039878.1-P	Field mustard	plastid	20.56	21.35

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra030038	EnsemblPlants:Bra030038.1	EnsemblPlants:Bra030038.1-P
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:Gal_Oxase/kelch_b-propeller
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	UniProt:M4EML8	PFAM:PF00646	PFscan:PS50181
PANTHER:PTHR44829	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	UniParc:UPI00025411B7	SEG:seg

Description

AT1G27340 (E=1e-218) | F-box family protein

Coordinates

chrA07:-:7007958..7009616

Molecular Weight (calculated)

52180.3 Da

IEP (calculated)

8.939

GRAVY (calculated)

-0.242

Length

462 amino acids

Sequence
(BLAST)

001: MEEEFAMLRQ LIGQLQELLH NSSPPPPSPP SSSSSSPSFV VLHNPQHQNR CCCLPLFDDT SSSDVSCDTL MAAGKRPRYL KMLDTAKRSR KQKNQVKSCT
101: EAGDGIMDQE LWQGFPQDIF ESVLSKLPVA TLFQFRSVCR KWNSLIDSDS FSKSCTDLPQ TIPWFYTITH ENVNSGQVYD PSSKKWRHPV IPALPKKSIV
201: LPMTSAGGLV CFLDIGHRNF YVSNPLTKSF RELPARSFKV WSRVAVGMTL NGNSTSDGYK VLWVGCEGEY EVYDSLRNVW TKRGTIPSNI KLPVLLNFKS
301: QPVAINSTLY FMLTDPEGIL SYDMVSGRWR QYIIPCPPHL SDHTLAECGE RLMLVGLVSK NAATCVCVWE LQKMTLLWKE VDRMPNVWCL EFYGKHVRMN
401: CLGNKGCLML LSLRSRQMNR LIMYDAVAKE WGKVPGCTVP RGRKRLWIAC GTAFQPSPTA RA

Best Arabidopsis Sequence Match ( AT1G27340.1 )
(BLAST)

001: MEEELAMLRQ LIGQLQELLH NGSPPPPSSS SSLSSSSPSF LVLHHPQYQN GWCLPCIEDT SADDCCDIVM AGGKRPGIFK MLETVKPPVK RTRKERTQGK
101: SCTEVDEISG NMDQEIWQEF PQDLFEDVVS RLPMATFFQF RAVCRKWNAL IDSDSFSRCF TELPQTIPWF YTITHENVNS GQVYDPSLKK WHHPIIPALP
201: KKSIVLPMAS AGGLVCFLDI GHRNFYVSNP LTKSFRELPA RSFKVWSRVA VGMTLNGNST SHGYKVLWVG CEGEYEVYDS LSNVWTKRGT IPSNIKLPVL
301: LNFKSQPVAI HSTLYFMLTD PEGILSYDMV SGKWKQFIIP GPPDLSDHTL AACGERLMLV GLLTKNAATC VCIWELQKMT LLWKEVDRMP NIWCLEFYGK
401: HIRMNCLGNK GCLILLSLRS RQMNRLITYN AVTREWTKVP GCTVPRGRKR LWIACGTAFH PSPTARA

Arabidopsis Description

FBX6F-box only protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZK1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.