Factsheet for VIT_01s0010g03730.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27340.1	VIT_18s0001g14860.t01	AT5G42190.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31515	Soybean	cytosol	74.29	75.11
PGSC0003DMT400084722	Potato	cytosol, mitochondrion	76.26	74.46
KRG97395	Soybean	cytosol	74.95	73.81
Solyc05g015520.2.1	Tomato	cytosol	75.38	73.61
GSMUA_AchrUn_...	Banana	cytosol	58.68	69.35
KRH42677	Soybean	cytosol, nucleus, plasma membrane	67.91	68.21
KRH58777	Soybean	cytosol	67.03	67.18
AT1G27340.1	Thale cress	cytosol	66.15	64.45
EES04122	Sorghum	cytosol	61.98	63.8
CDY27608	Canola	nucleus	64.62	63.23
Bra032820.1-P	Field mustard	nucleus	64.62	63.23
CDX84930	Canola	cytosol, plastid	64.84	63.17
Zm00001d011994_P001	Maize	cytosol	61.32	62.98
Os01t0923900-01	Rice	cytosol	61.1	62.75
CDY03911	Canola	nucleus, plastid	63.08	62.39
TraesCS3D01G428200.2	Wheat	cytosol	60.88	61.97
TraesCS3A01G435400.2	Wheat	cytosol	60.66	61.74
TraesCS3B01G470300.2	Wheat	cytosol	60.44	61.52
Bra030038.1-P	Field mustard	nucleus, plastid	62.42	61.47
CDY15715	Canola	nucleus, plastid	62.64	61.42
Zm00001d042309_P001	Maize	cytosol	59.78	57.63
VIT_14s0083g00810.t01	Wine grape	cytosol	24.4	25.4
VIT_01s0011g01220.t01	Wine grape	plastid	21.54	22.48
VIT_15s0046g01540.t01	Wine grape	cytosol	20.22	22.28
VIT_02s0025g00830.t01	Wine grape	cytosol	19.12	21.43
VIT_04s0008g03190.t01	Wine grape	cytosol	18.9	21.13
VIT_18s0001g09110.t01	Wine grape	plasma membrane	21.1	18.43

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100242085	wikigene:100242085	Gene3D:2.120.10.80	MapMan:35.1	EMBL:AM477084
ProteinID:CAN77429	ProteinID:CAN77429.1	ProteinID:CCB51305	ProteinID:CCB51305.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
UniProt:F6HGB2	EMBL:FN595754	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009653	GO:GO:0009719	GO:GO:0009987
GO:GO:0010305	GO:GO:0010928	GO:GO:0016020	GO:GO:0016021	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0031146	GO:GO:0060776	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	EntrezGene:LOC100242085	wikigene:LOC100242085	PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR44829
SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	TIGR:TC56019	UniParc:UPI000210A729	ArrayExpress:VIT_01s0010g03730
EnsemblPlantsGene:VIT_01s0010g03730	EnsemblPlants:VIT_01s0010g03730.t01	unigene:Vvi.14049	RefSeq:XP_002271194	RefSeq:XP_002271194.1	SEG:seg

Description

No Description!

Coordinates

chr1:+:21087951..21095392

Molecular Weight (calculated)

51822.8 Da

IEP (calculated)

8.613

GRAVY (calculated)

-0.243

Length

455 amino acids

Sequence
(BLAST)

001: MLRQLIGEVQ ELCELYGSSN YIPHQPHTQL LYHHHQHSHR WCFSNFDDDS AEDDYCDPIM RSGKSGTLKT METYEPPPTK KSRKERNRGK LPGTTNSAEV
101: MEQEIWKEFP EDLFEAVIAR LPIATFFRFR LVCRKWNSLL NSNSFSQHCA QVPQGHPWFY TITHENVDPG AMYDPSLKKW HHPTIPSLRA KTVLPVASAG
201: GLVCFLDINH RNFFVCNPLT QSFKELPARS VRVWSRVAVG MTLNGNSTTA GYKILWVGCD GEYEVYDSVK NSWARPGSMP LHVKLPLSLN FLSQAVSIDG
301: TIYLMRSDPD GIVSYDMVTG AWKQFIIPAP LHLTDHTLAE CGGRIMLVGL LTKNAATCVC IWELQKMMLL WKEVDRMPNI WCLEFYGKHV RMTCLGNKGL
401: LMLSLRSRQM NRLVTYNVLS REWLKVPGCV VPRGGKKRQW IACGTAFHPC LTASA

Best Arabidopsis Sequence Match ( AT1G27340.1 )
(BLAST)

001: MEEELAMLRQ LIGQLQELLH NGSPPPPSSS SSLSSSSPSF LVLHHPQYQN GWCLPCIEDT SADDCCDIVM AGGKRPGIFK MLETVKPPVK RTRKERTQGK
101: SCTEVDEISG NMDQEIWQEF PQDLFEDVVS RLPMATFFQF RAVCRKWNAL IDSDSFSRCF TELPQTIPWF YTITHENVNS GQVYDPSLKK WHHPIIPALP
201: KKSIVLPMAS AGGLVCFLDI GHRNFYVSNP LTKSFRELPA RSFKVWSRVA VGMTLNGNST SHGYKVLWVG CEGEYEVYDS LSNVWTKRGT IPSNIKLPVL
301: LNFKSQPVAI HSTLYFMLTD PEGILSYDMV SGKWKQFIIP GPPDLSDHTL AACGERLMLV GLLTKNAATC VCIWELQKMT LLWKEVDRMP NIWCLEFYGK
401: HIRMNCLGNK GCLILLSLRS RQMNRLITYN AVTREWTKVP GCTVPRGRKR LWIACGTAFH PSPTARA

Arabidopsis Description

FBX6F-box only protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZK1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.