Factsheet for Os01t0923900-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04122	Sorghum	cytosol	88.26	88.46
Zm00001d011994_P001	Maize	cytosol	87.81	87.81
TraesCS3A01G435400.2	Wheat	cytosol	86.23	85.46
TraesCS3D01G428200.2	Wheat	cytosol	86.23	85.46
TraesCS3B01G470300.2	Wheat	cytosol	86.0	85.23
Zm00001d042309_P001	Maize	cytosol	83.75	78.6
GSMUA_AchrUn_...	Banana	cytosol	57.34	65.97
VIT_01s0010g03730.t01	Wine grape	cytosol	62.75	61.1
KRH31515	Soybean	cytosol	61.85	60.89
KRG97395	Soybean	cytosol	61.85	59.31
PGSC0003DMT400084722	Potato	cytosol, mitochondrion	62.08	59.01
Solyc05g015520.2.1	Tomato	cytosol	61.4	58.37
AT1G27340.1	Thale cress	cytosol	58.24	55.25
CDY27608	Canola	nucleus	57.56	54.84
Bra032820.1-P	Field mustard	nucleus	57.56	54.84
CDX84930	Canola	cytosol, plastid	57.79	54.82
KRH42677	Soybean	cytosol, nucleus, plasma membrane	55.3	54.08
KRH58777	Soybean	cytosol	55.3	53.96
Bra030038.1-P	Field mustard	nucleus, plastid	55.98	53.68
CDY03911	Canola	nucleus, plastid	55.3	53.26
CDY15715	Canola	nucleus, plastid	55.76	53.23
Os04t0668600-01	Rice	plastid	21.67	22.86
Os02t0260200-01	Rice	cytosol, endoplasmic reticulum	20.09	21.81
Os01t0659900-01	Rice	cytosol	19.64	21.17
Os07t0617700-01	Rice	cytosol	19.19	20.94
Os03t0399400-01	Rice	mitochondrion	18.96	20.59
Os06t0665400-01	Rice	plastid	17.83	18.41

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.120.10.80	MapMan:35.1	EntrezGene:4327256	EMBL:AK241547	ProteinID:BAD88307.1
ProteinID:BAF07157.2	ProteinID:BAS75966.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009653	GO:GO:0009719
GO:GO:0009987	GO:GO:0010305	GO:GO:0010928	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0031146	GO:GO:0060776	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
EnsemblPlantsGene:Os01g0923900	EnsemblPlants:Os01t0923900-01	PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR44829	UniProt:Q5JJQ2
SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	UniParc:UPI00004C2C14	RefSeq:XP_015622240.1	:

Description

F-box protein 53Cyclin-like F-box domain containing protein. (Os01t0923900-01)

Coordinates

chr1:-:40442923..40446341

Molecular Weight (calculated)

50477.3 Da

IEP (calculated)

8.564

GRAVY (calculated)

-0.214

Length

443 amino acids

Sequence
(BLAST)

001: MGEVAALRQL VGEVQELWDL YGANSHPLPR WYLLDFEHGS IKDDHCRART GYNSELLKIM EANQSPPRKR SRRDKNREKA PNSNSTEEMQ QEIWSEFPGD
101: LFETVVARLP VAAIFRFRTV CRNWYSMLGS ESFSQQYSEV PQRLPWFYTI THENASNNVA MYDPSLKKWH HPSVPLAPAK IVIPVASAGG LVCLLDLSHR
201: NFYICNPLTQ SLKEIPRRSV QAWSRVAVGM VMNGGTSNEG YKVMWLGNDG NYEVYDSMKN MWSCPGTFPP SIKLPLALNF RSQPVAVGSM LYFMCAEPEG
301: VLSYDVSTGI WRQFVIPLPL HLTDHTLAEF QGRVMLVGLL CKNAATCVCI WELQKMTLLW KEVDRMPNIW CLEFYGKHMK MTCLGNSGLL MLSLKAKRMN
401: RLVTYNLLNK EWQKVPDCML PCSRKKQWIA CGTAFGPCPS ALA

Best Arabidopsis Sequence Match ( AT1G27340.1 )
(BLAST)

001: MEEELAMLRQ LIGQLQELLH NGSPPPPSSS SSLSSSSPSF LVLHHPQYQN GWCLPCIEDT SADDCCDIVM AGGKRPGIFK MLETVKPPVK RTRKERTQGK
101: SCTEVDEISG NMDQEIWQEF PQDLFEDVVS RLPMATFFQF RAVCRKWNAL IDSDSFSRCF TELPQTIPWF YTITHENVNS GQVYDPSLKK WHHPIIPALP
201: KKSIVLPMAS AGGLVCFLDI GHRNFYVSNP LTKSFRELPA RSFKVWSRVA VGMTLNGNST SHGYKVLWVG CEGEYEVYDS LSNVWTKRGT IPSNIKLPVL
301: LNFKSQPVAI HSTLYFMLTD PEGILSYDMV SGKWKQFIIP GPPDLSDHTL AACGERLMLV GLLTKNAATC VCIWELQKMT LLWKEVDRMP NIWCLEFYGK
401: HIRMNCLGNK GCLILLSLRS RQMNRLITYN AVTREWTKVP GCTVPRGRKR LWIACGTAFH PSPTARA

Arabidopsis Description

FBX6F-box only protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZK1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.