CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011994_P001	Maize	cytosol	97.06	96.84
Os01t0923900-01	Rice	cytosol	88.46	88.26
Zm00001d042309_P001	Maize	cytosol	91.4	85.59
TraesCS3D01G428200.2	Wheat	cytosol	85.52	84.56
TraesCS3A01G435400.2	Wheat	cytosol	85.07	84.12
TraesCS3B01G470300.2	Wheat	cytosol	85.07	84.12
GSMUA_AchrUn_...	Banana	cytosol	57.01	65.45
VIT_01s0010g03730.t01	Wine grape	cytosol	63.8	61.98
KRH31515	Soybean	cytosol	62.9	61.78
KRG97395	Soybean	cytosol	62.44	59.74
PGSC0003DMT400084722	Potato	cytosol, mitochondrion	62.22	59.01
Solyc05g015520.2.1	Tomato	cytosol	61.31	58.15
AT1G27340.1	Thale cress	cytosol	59.73	56.53
CDX84930	Canola	cytosol, plastid	58.6	55.46
CDY27608	Canola	nucleus	58.14	55.27
Bra032820.1-P	Field mustard	nucleus	58.14	55.27
CDY03911	Canola	nucleus, plastid	56.56	54.35
Bra030038.1-P	Field mustard	nucleus, plastid	56.79	54.33
KRH58777	Soybean	cytosol	55.66	54.19
KRH42677	Soybean	cytosol, nucleus, plasma membrane	55.43	54.08
CDY15715	Canola	nucleus, plastid	56.33	53.66
EES01202	Sorghum	cytosol	19.68	21.43
EES11618	Sorghum	plastid	20.36	21.33
KXG29968	Sorghum	cytosol	19.68	21.32
OQU90263	Sorghum	cytosol, mitochondrion, plastid	18.55	19.9
KXG39191	Sorghum	nucleus	18.33	19.29
OQU76836	Sorghum	plastid	17.87	18.33

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.120.10.80	MapMan:35.1	EntrezGene:8079816	UniProt:C5XGD1	EnsemblPlants:EES04122
ProteinID:EES04122	ProteinID:EES04122.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009653	GO:GO:0009719
GO:GO:0009987	GO:GO:0010305	GO:GO:0010928	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0031146	GO:GO:0060776	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR44829	SMART:SM00256	EnsemblPlantsGene:SORBI_3003G407900	SUPFAM:SSF50965
SUPFAM:SSF81383	unigene:Sbi.1852	UniParc:UPI0001A855BD	RefSeq:XP_002459002.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:71558255..71562504

Molecular Weight (calculated)

50362.3 Da

IEP (calculated)

8.847

GRAVY (calculated)

-0.212

Length

442 amino acids

Sequence
(BLAST)

001: MGEVAALRQL VGQVQELWDL YGANAHPIPR WYLLDFEHGS IKDDYCGGRP GYNSELLKIM ETNQSPPRKR PRRDRNREKA PSNKTEVMQQ EIWRDFPEDL
101: FETVIARLPV AAIFRFRTVC RKWSSLLGSD SFSHQYSEAP RGLPWFYTIT HENANNNVAM YDPSLKKWHH PSVPLTPTKI VIPVASVGGL VCLLDLSHRN
201: FYICNPLMQS LKEIPPRSVQ GWSRVAVGMV LNGRSSSDGY KVMWLGNDGT YEVYDSTKNM WSCPGSFPPG IKLPLALNFR SQPVAVGSTV YFMCAEPDGV
301: LSYDVSTGIW RQFAIPLPLH LTDHTLAEFQ GRVMLVGLLC KNAATCVCIW ELQKMTLLWK EVDRMPNIWC LEFYGKHMKM TCLGNSGLLM LSLKAKRMNR
401: LVTYNLFKRE WQKVPDCMLP CSRKKQWIAC GTAFDPVPCA LA

Best Arabidopsis Sequence Match ( AT1G27340.1 )
(BLAST)

001: MEEELAMLRQ LIGQLQELLH NGSPPPPSSS SSLSSSSPSF LVLHHPQYQN GWCLPCIEDT SADDCCDIVM AGGKRPGIFK MLETVKPPVK RTRKERTQGK
101: SCTEVDEISG NMDQEIWQEF PQDLFEDVVS RLPMATFFQF RAVCRKWNAL IDSDSFSRCF TELPQTIPWF YTITHENVNS GQVYDPSLKK WHHPIIPALP
201: KKSIVLPMAS AGGLVCFLDI GHRNFYVSNP LTKSFRELPA RSFKVWSRVA VGMTLNGNST SHGYKVLWVG CEGEYEVYDS LSNVWTKRGT IPSNIKLPVL
301: LNFKSQPVAI HSTLYFMLTD PEGILSYDMV SGKWKQFIIP GPPDLSDHTL AACGERLMLV GLLTKNAATC VCIWELQKMT LLWKEVDRMP NIWCLEFYGK
401: HIRMNCLGNK GCLILLSLRS RQMNRLITYN AVTREWTKVP GCTVPRGRKR LWIACGTAFH PSPTARA

Arabidopsis Description

FBX6F-box only protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZK1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.