CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026558_P001	Maize	cytosol, mitochondrion, plastid	94.08	94.52
Zm00001d026557_P001	Maize	cytosol, mitochondrion, plastid	94.08	94.52
Os04t0668600-01	Rice	plastid	87.44	87.86
GSMUA_Achr1P09520_001	Banana	cytosol	66.82	80.8
TraesCS2D01G541700.1	Wheat	mitochondrion	76.54	78.59
HORVU2Hr1G118340.2	Barley	cytosol	60.43	68.0
PGSC0003DMT400003737	Potato	cytosol	69.19	66.67
KRH45144	Soybean	cytosol, plastid	69.19	66.67
Solyc02g089310.1.1	Tomato	cytosol, plastid	68.96	66.44
VIT_14s0083g00810.t01	Wine grape	cytosol	68.72	66.36
Bra006317.1-P	Field mustard	cytosol, plastid	68.01	65.98
CDX70633	Canola	cytosol, plastid	67.77	65.9
CDX78648	Canola	cytosol, plastid	67.77	65.75
AT5G15710.2	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, plastid, vacuole	67.77	63.84
KRH01425	Soybean	cytosol	66.82	62.39
EES01202	Sorghum	cytosol	21.8	22.66
KXG29968	Sorghum	cytosol	21.8	22.55
EES04122	Sorghum	cytosol	21.33	20.36
OQU76836	Sorghum	plastid	20.62	20.19
KXG39191	Sorghum	nucleus	19.91	20.0
OQU90263	Sorghum	cytosol, mitochondrion, plastid	18.48	18.93

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:2.120.10.80	EntrezGene:8070292	UniProt:C5YA17	EnsemblPlants:EES11618
ProteinID:EES11618	ProteinID:EES11618.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031146
InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PFAM:PF00646	PFscan:PS50181
PANTHER:PTHR45291	SMART:SM00256	EnsemblPlantsGene:SORBI_3006G258400	SUPFAM:SSF50965	SUPFAM:SSF81383	UniParc:UPI0001A87281
RefSeq:XP_002447290.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:59451480..59454496

Molecular Weight (calculated)

46907.5 Da

IEP (calculated)

8.929

GRAVY (calculated)

-0.116

Length

422 amino acids

Sequence
(BLAST)

001: MDAVPPARAA RPTSPSRPPK AIRSTKPRGL DEDTAAPPAF PKAKSPTSSG AGADASLHHH HHHADVPMDA SVWAGLPDDL LVEVLARVPP FFLFRLRPVC
101: RRWEAILHDP AFLAAHAAVP SHGPCLLTVS RSGGGGGGHT PPQCTVLSVP LHARYKLPFA FLPAWDLWLV GSSGGLVCFS GFDGAAFRTV VCNPLTQAWR
201: VLPDMHCNQQ RQLVLTVDKS RRSFKVIAAS DVYGDKTLPT EVYDSKENKW SVHQMMPAAN LCSSKMAFCD SRLYLETLSP LGLMMYRVDA GRWEHIPAKF
301: PRSLLDGYLV AGARTRLFLV GRIGLYSTLQ SMRIWELDHG RTVWVEISRM PPRYFRALLR LSAERFECFG QDNLICFTSW NQGKGLLYDV DKKAWSWIAG
401: CASQLCNSQV CFYEPRFDTS IY

Best Arabidopsis Sequence Match ( AT5G15710.2 )
(BLAST)

001: MERLGFWGLL MGSVEKSLDS GNSLACSASA KNGDEESSTS SKQVSPLKGS GSRNTSPLGR VGSRNTSPSR QKVVKTKPRG LEEETVASFG KQVVADVQME
101: DGIWAMLPED LLNEILARVP PFMIFRIRSV CKKWNLILQD NSFLKFHSNV SSHGPCLLTF WKNSPQIPQC SVFSLPLKTW YKIPFTFLPP WAFWLVGSSG
201: GLVCFSGLDG LTFRTLVCNP LMQSWRTLPS MHYNQQRQLI MVVDRSDKSF KVIATSDIYG DKSLPTEVYD SKTDKWSLHQ IMPAVNLCSS KMAYCDSRLY
301: LETLSPLGLM MYRLDSGQWE HIPAKFPRSL LDGYLVAGTQ KRLFLVGRIG LYSTLQSMRI WELDHTKVSW VEISRMPPKY FRALLRLSAE RFECFGQDNL
401: ICFTSWNQGK GLLYNVDKKI WSWISGCALQ SCNSQVCFYE PRFDASVL

Arabidopsis Description

F-box/kelch-repeat protein At5g15710 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFV5]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.