CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78648	Canola	cytosol, plastid	98.85	98.62
Bra006317.1-P	Field mustard	cytosol, plastid	98.39	98.16
AT5G15710.2	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, plastid, vacuole	93.09	90.18
GSMUA_Achr1P09520_001	Banana	cytosol	67.74	84.24
Solyc02g089310.1.1	Tomato	cytosol, plastid	79.95	79.22
PGSC0003DMT400003737	Potato	cytosol	79.95	79.22
VIT_14s0083g00810.t01	Wine grape	cytosol	79.49	78.95
KRH45144	Soybean	cytosol, plastid	78.8	78.08
KRH01425	Soybean	cytosol	77.88	74.78
Os04t0668600-01	Rice	plastid	66.82	69.05
EES11618	Sorghum	plastid	65.9	67.77
Zm00001d026558_P001	Maize	cytosol, mitochondrion, plastid	64.75	66.9
Zm00001d026557_P001	Maize	cytosol, mitochondrion, plastid	64.75	66.9
TraesCS2D01G541700.1	Wheat	mitochondrion	62.67	66.18
HORVU2Hr1G118340.2	Barley	cytosol	52.3	60.53
CDX89124	Canola	cytosol	22.81	24.21
CDY53910	Canola	cytosol	22.58	24.02
CDY43939	Canola	cytosol	23.04	23.98
CDY12448	Canola	plastid	24.42	23.77
CDY52009	Canola	nucleus	22.12	23.59
CDY52183	Canola	plastid	24.19	23.54
CDX71729	Canola	mitochondrion	23.04	22.52
CDY32964	Canola	plastid	20.51	22.36
CDY43599	Canola	plastid	20.74	22.33
CDY03911	Canola	nucleus, plastid	23.5	22.17
CDX84930	Canola	cytosol, plastid	23.5	21.84
CDY11364	Canola	cytosol, golgi, nucleus	22.81	21.76
CDY15715	Canola	nucleus, plastid	23.04	21.55
CDY27608	Canola	nucleus	22.81	21.29
CDX68951	Canola	cytosol	19.82	20.92
CDX75335	Canola	nucleus	19.59	20.83
CDY71979	Canola	cytosol	18.89	20.81
CDX72391	Canola	cytosol	18.66	20.51

Protein Annotations

EnsemblPlants:CDX70633	EnsemblPlantsGene:GSBRNA2T00140482001	Gene3D:1.20.1280.50	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
PANTHER:PTHR45291	PFAM:PF00646	PFscan:PS50181	ProteinID:CDX70633	ProteinID:CDX70633.1	SEG:seg
SMART:SM00256	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0004EC3D6A	MapMan:19.2.2.8.1.4.6	:

Description

BnaC03g07170D

Coordinates

chrLK031791:+:1322891..1324630

Molecular Weight (calculated)

49704.3 Da

IEP (calculated)

9.130

GRAVY (calculated)

-0.156

Length

434 amino acids

Sequence
(BLAST)

001: MERLGFWGLL MGSVEKSSDS RKLVTCSKNR DEESSSSSSA SPLKRSLSRN TSPSRQIVVK TKPRGLEEET VASFGKQVVA ADVPMEESIW AMLPEDLLNE
101: ILARLPPFMI FRIRSVCKKW NLILQDNSFL KFHSNVSSHG PCLLTFWKNS PQVPQCSVFS LPLKTWYKVP FTFLPSWAFW LVGSSGGLVC FSGLDGLTFR
201: TLVCNPLMQS WRVLPNMHYN QQRQLIMVVD RSEKSFKVIA TSDIYGDKSL PTEVYDSKTD KWSLHQIMPA VNLCSSKMAY CDSRLYLETL SPLGLMMYRL
301: DTGQWEHIPA KFPRSLLDGY LVAGTQKRLF LVGRIGLYST LQSMRIWELD HTKVSWMEIS RMPPKYFRAL LRLSAERFEC FGQDNLICFT SWNQGKGLLY
401: NVDKKIWSWI SGCALQSCNS QVCFYEPRFD ASVH

Best Arabidopsis Sequence Match ( AT5G15710.2 )
(BLAST)

001: MERLGFWGLL MGSVEKSLDS GNSLACSASA KNGDEESSTS SKQVSPLKGS GSRNTSPLGR VGSRNTSPSR QKVVKTKPRG LEEETVASFG KQVVADVQME
101: DGIWAMLPED LLNEILARVP PFMIFRIRSV CKKWNLILQD NSFLKFHSNV SSHGPCLLTF WKNSPQIPQC SVFSLPLKTW YKIPFTFLPP WAFWLVGSSG
201: GLVCFSGLDG LTFRTLVCNP LMQSWRTLPS MHYNQQRQLI MVVDRSDKSF KVIATSDIYG DKSLPTEVYD SKTDKWSLHQ IMPAVNLCSS KMAYCDSRLY
301: LETLSPLGLM MYRLDSGQWE HIPAKFPRSL LDGYLVAGTQ KRLFLVGRIG LYSTLQSMRI WELDHTKVSW VEISRMPPKY FRALLRLSAE RFECFGQDNL
401: ICFTSWNQGK GLLYNVDKKI WSWISGCALQ SCNSQVCFYE PRFDASVL

Arabidopsis Description

F-box/kelch-repeat protein At5g15710 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFV5]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.