Factsheet for Zm00001d026557_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	mitochondrion
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026558_P001	Maize	cytosol, mitochondrion, plastid	100.0	100.0
EES11618	Sorghum	plastid	94.52	94.08
Os04t0668600-01	Rice	plastid	86.9	86.9
GSMUA_Achr1P09520_001	Banana	cytosol	66.19	79.66
TraesCS2D01G541700.1	Wheat	mitochondrion	75.71	77.37
HORVU2Hr1G118340.2	Barley	cytosol	60.0	67.2
KRH45144	Soybean	cytosol, plastid	69.52	66.67
Solyc02g089310.1.1	Tomato	cytosol, plastid	68.81	65.98
PGSC0003DMT400003737	Potato	cytosol	68.81	65.98
VIT_14s0083g00810.t01	Wine grape	cytosol	68.57	65.9
Bra006317.1-P	Field mustard	cytosol, plastid	67.14	64.83
CDX70633	Canola	cytosol, plastid	66.9	64.75
CDX78648	Canola	cytosol, plastid	66.9	64.6
AT5G15710.2	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, plastid, vacuole	67.14	62.95
KRH01425	Soybean	cytosol	67.14	62.39
Zm00001d053358_P001	Maize	cytosol	21.43	22.22
Zm00001d016066_P001	Maize	cytosol	21.67	21.93
Zm00001d043989_P001	Maize	cytosol	20.95	21.89
Zm00001d011994_P001	Maize	cytosol	21.67	20.54
Zm00001d029442_P001	Maize	cytosol, nucleus, plastid	19.52	20.45
Zm00001d046950_P001	Maize	cytosol, mitochondrion, plastid	20.24	19.63
Zm00001d036653_P001	Maize	plastid	20.24	19.5
Zm00001d042309_P001	Maize	cytosol	21.9	19.49
Zm00001d022151_P001	Maize	cytosol, mitochondrion, plastid	17.86	18.07
Zm00001d006874_P001	Maize	cytosol	16.9	17.53

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100193493	MapMan:19.2.2.8.1.4.6	Gene3D:2.120.10.80	ProteinID:AQK47083.1	ProteinID:AQK47084.1
UniProt:B4FF73	EMBL:BT035761	EMBL:EU956782	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller
PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR45291	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383
UniParc:UPI00017B6550	EnsemblPlantsGene:Zm00001d026557	EnsemblPlants:Zm00001d026557_P001	EnsemblPlants:Zm00001d026557_T001	SEG:seg	:

Description

F-box/kelch-repeat protein

Coordinates

chr10:+:148112845..148114736

Molecular Weight (calculated)

46835.5 Da

IEP (calculated)

9.048

GRAVY (calculated)

-0.095

Length

420 amino acids

Sequence
(BLAST)

001: MDAVPPARAA RPTSPSRAPK AIRSTKPRGL DEDTAAPPAF PKAKSLPSSA AGAEASLLHH NHHADVPMDA RVWAGLPDDL LVEVLARVSP FLLFRLRTVC
101: RRWESVLHDP AFLAAHAAVP SHGPCLLTVS RGGNGTHSPP QCSVLSVPLH ARYKLPFAFL PAWDLWLVGS SGGLVCFSGF DGAAFRTIVC NPLTQAWRVL
201: PDMHCNQQRQ LVLTVDKNRR SFKVIAASDV YGDKTLPTEV YNSKENKWSV HQMMPAANLC SSKMAFCDST LYLETLSPLG LMMYRVDAGR WEHIPAKFPR
301: SLLDGYLVAG ARTRLFLVGR IGLYSTLQSM RIWELDHGRS VWVEISRMPP RYFRALLRLS AERFECFGQD NLICFTSWNQ GKGLLYDVDK KTWSWIAGCA
401: SQLCNSQVCF YEPRFDTSIY

Best Arabidopsis Sequence Match ( AT5G15710.2 )
(BLAST)

001: MERLGFWGLL MGSVEKSLDS GNSLACSASA KNGDEESSTS SKQVSPLKGS GSRNTSPLGR VGSRNTSPSR QKVVKTKPRG LEEETVASFG KQVVADVQME
101: DGIWAMLPED LLNEILARVP PFMIFRIRSV CKKWNLILQD NSFLKFHSNV SSHGPCLLTF WKNSPQIPQC SVFSLPLKTW YKIPFTFLPP WAFWLVGSSG
201: GLVCFSGLDG LTFRTLVCNP LMQSWRTLPS MHYNQQRQLI MVVDRSDKSF KVIATSDIYG DKSLPTEVYD SKTDKWSLHQ IMPAVNLCSS KMAYCDSRLY
301: LETLSPLGLM MYRLDSGQWE HIPAKFPRSL LDGYLVAGTQ KRLFLVGRIG LYSTLQSMRI WELDHTKVSW VEISRMPPKY FRALLRLSAE RFECFGQDNL
401: ICFTSWNQGK GLLYNVDKKI WSWISGCALQ SCNSQVCFYE PRFDASVL

Arabidopsis Description

F-box/kelch-repeat protein At5g15710 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFV5]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.