Factsheet for Zm00001d043989_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01202	Sorghum	cytosol	92.54	91.63
TraesCS3D01G239300.1	Wheat	cytosol	77.11	77.11
Os01t0659900-01	Rice	cytosol	78.61	76.89
TraesCS3B01G267600.1	Wheat	cytosol	76.62	76.62
TraesCS3A01G239100.1	Wheat	cytosol	76.62	76.62
HORVU3Hr1G059460.1	Barley	cytosol	76.62	76.62
GSMUA_Achr9P05330_001	Banana	cytosol	67.66	67.66
Solyc01g095370.2.1	Tomato	cytosol	60.45	60.15
PGSC0003DMT400000251	Potato	cytosol	60.2	59.75
VIT_15s0046g01540.t01	Wine grape	cytosol	60.7	59.08
KRH68853	Soybean	cytosol	59.2	59.06
KRG97101	Soybean	cytosol	59.45	59.01
Zm00001d053358_P001	Maize	cytosol	57.21	56.79
Bra007616.1-P	Field mustard	cytosol	56.72	56.44
VIT_02s0025g00830.t01	Wine grape	cytosol	56.22	55.66
CDY53910	Canola	cytosol	56.47	55.64
Bra003458.1-P	Field mustard	nucleus	56.47	55.64
CDY52009	Canola	nucleus	56.22	55.53
CDX89124	Canola	cytosol	56.22	55.26
KRH47995	Soybean	cytosol	36.82	55.02
CDY43939	Canola	cytosol	55.72	53.72
Bra014429.1-P	Field mustard	cytosol	56.22	53.68
Zm00001d016066_P001	Maize	cytosol	55.22	53.49
CDX71729	Canola	mitochondrion	56.72	51.35
AT3G61590.4	Thale cress	plasma membrane	55.72	50.11
CDY11364	Canola	cytosol, golgi, nucleus	56.47	49.89
GSMUA_Achr8P27920_001	Banana	golgi, mitochondrion, plasma membrane, plastid	59.7	44.61
Zm00001d029442_P001	Maize	cytosol, nucleus, plastid	21.89	21.95
Zm00001d026557_P001	Maize	cytosol, mitochondrion, plastid	21.89	20.95
Zm00001d026558_P001	Maize	cytosol, mitochondrion, plastid	21.89	20.95
Zm00001d036653_P001	Maize	plastid	21.14	19.5
Zm00001d011994_P001	Maize	cytosol	21.39	19.41
Zm00001d046950_P001	Maize	cytosol, mitochondrion, plastid	20.65	19.17
Zm00001d042309_P001	Maize	cytosol	22.14	18.86
Zm00001d022151_P001	Maize	cytosol, mitochondrion, plastid	19.4	18.8
Zm00001d006874_P001	Maize	cytosol	18.66	18.52

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100384626	MapMan:19.2.2.8.1.4.6	EMBL:BT083799	UniProt:C4IZ02	InterPro:F-box-assoc_interact_dom
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:Gal_Oxase/kelch_b-propeller
InterPro:IPR001810	ProteinID:ONM39628.1	PFAM:PF12937	PFscan:PS50181	PANTHER:PTHR10706	PANTHER:PTHR10706:SF138
SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	UniParc:UPI0001A4BF99	EnsemblPlantsGene:Zm00001d043989
EnsemblPlants:Zm00001d043989_P001	EnsemblPlants:Zm00001d043989_T001	:	:	:	:

Description

F-box/kelch-repeat protein

Coordinates

chr3:-:215689351..215692318

Molecular Weight (calculated)

45800.0 Da

IEP (calculated)

6.771

GRAVY (calculated)

-0.086

Length

402 amino acids

Sequence
(BLAST)

001: MEDHSSWDYL PVEHIRTPVF NSGVVSEASN GGNDFSISLD AVVPDDILER IFTFLPIASM MRATSVCKRW HDIICSRRFL WTHMLPQRPW YFMFTSNKTA
101: AGYAFDPILR KWYDLELPYI DKSSCFISSS CGLVCFMDND NRNTISVCNP ITKHSRRLLE PPGETLPDYS TIAMNVDRLS HKYSIALAKS KQIPEDFVRW
201: DFSVYKYDSS SGSWVTSVRE VFVGWRGGDN SVICDGVLYC LIHSTGALGN VNPRHGLIMY DLAGEPSETS LMQTSISVPC SLTCGRLVNL KEKLVLVGGI
301: AKHNRPDIIK GIGIWELHER QWHEVARMPH KFFQGFGEFD DVFACSGIDD LVYIQSYGAT ALLVFDMMQK QWRWSVKCPV SKRFPLQLFT GFCFEPRLDI
401: TV

Best Arabidopsis Sequence Match ( AT3G61590.1 )
(BLAST)

001: MEAETSWTNY PYSYITYVPE AESYREQSDD EAKVETFSMD SLLPDDLLER ILSFLPIASI FRAGTVCKRW NEIVSSRRFL CNFSNNSVSQ RPWYFMFTTT
101: DDPSGYAYDP IIRKWYSFDL PCIETSNWFV ASSCGLVCFM DNDCRNKIYV SNPITKQWRT LIEPPGHKST DYTAMSTSVN RANQAVNRAN RSYSVSIVKS
201: KQVPGNFFQW DLSIHLYSSE TMTWTTLVND VLSGWRGGNE SVICNNVLYF MIYSTGGSDH RHGLIASNLS SIGSPSSGIL MRSFIPMPCS LTCGRLMNLR
301: ERLVIVGGIG KHDRPEVIKG IGIWVLKGKE WVEMAKMPQR FFQGFGEFDE VFASSGTDDL VYIQSYGSPA LLTFDMNLKY WRWSQKCPVT KKFPLQLFTG
401: FCFEPRLEIA P

Arabidopsis Description

HWSGalactose oxidase/kelch repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRL4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.