Factsheet for TraesCS3B01G470300.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G428200.2	Wheat	cytosol	99.11	99.11
TraesCS3A01G435400.2	Wheat	cytosol	98.88	98.88
Os01t0923900-01	Rice	cytosol	85.23	86.0
EES04122	Sorghum	cytosol	84.12	85.07
Zm00001d011994_P001	Maize	cytosol	83.0	83.75
Zm00001d042309_P001	Maize	cytosol	80.09	75.85
GSMUA_AchrUn_...	Banana	cytosol	56.6	65.71
VIT_01s0010g03730.t01	Wine grape	cytosol	61.52	60.44
KRH31515	Soybean	cytosol	60.63	60.22
KRG97395	Soybean	cytosol	60.85	58.87
PGSC0003DMT400084722	Potato	cytosol, mitochondrion	60.18	57.73
Solyc05g015520.2.1	Tomato	cytosol	59.73	57.3
AT1G27340.1	Thale cress	cytosol	57.49	55.03
KRH42677	Soybean	cytosol, nucleus, plasma membrane	55.48	54.75
KRH58777	Soybean	cytosol	54.81	53.96
CDX84930	Canola	cytosol, plastid	56.38	53.96
CDY27608	Canola	nucleus	55.93	53.76
Bra032820.1-P	Field mustard	nucleus	55.93	53.76
Bra030038.1-P	Field mustard	nucleus, plastid	55.03	53.25
CDY03911	Canola	nucleus, plastid	54.36	52.83
CDY15715	Canola	nucleus, plastid	54.59	52.59
TraesCS3B01G267600.1	Wheat	cytosol	19.24	21.39
TraesCS2B01G193700.1	Wheat	cytosol	19.69	21.2
TraesCS5B01G100300.1	Wheat	cytosol, plastid	18.34	20.4
TraesCS7B01G384000.1	Wheat	extracellular, plasma membrane, plastid	17.45	16.15

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.120.10.80	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150
GO:GO:0009653	GO:GO:0009719	GO:GO:0009987	GO:GO:0010305	GO:GO:0010928	GO:GO:0060776
InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	PFAM:PF00646	PFscan:PS50181
PANTHER:PTHR44829	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	EnsemblPlantsGene:TraesCS3B01G470300	EnsemblPlants:TraesCS3B01G470300.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:718289884..718292821

Molecular Weight (calculated)

50800.7 Da

IEP (calculated)

8.278

GRAVY (calculated)

-0.169

Length

447 amino acids

Sequence
(BLAST)

001: MGEVAALRQL VGQVQELWDL YGAVHAHAHG PIPRWYLLDF EHGSVKDDYC GERTGYNPEL LKIMEANQSP PRKRPRRDRN REKASFLNSA EAMKLDIWSE
101: FPEDLFETVI ARLPVAAIFR FRSVCRKWCS LVGSDNFSQQ YSEVPQGMPW FYTITHENGN NNVAMYDPSL NKWHHPSVPL APANIVMPVA SAGGLVCLLD
201: LSHRNFYICN PLTQSLKEIP PRSVQAWSRV SVGMVLNGRT SNEGYKVMWL RNDGNHEVYD SVQNMWSQPG AFPPSIKLPL ALNFRSQPVA VGSTLYFMCS
301: EPEGVLSYDV STGIWIHFII PLPLHLTDHT LAEFQGKIML VGLLCKNAAT CVCIWELQKM TLLWKEVDRM PNIWCLEFYG KHMRMTCLGN SGLLMLSLKA
401: KRMNRLVMYN LVSKEWQKVP DCMLPCSRKK QWIACGTAFS PCPSASP

Best Arabidopsis Sequence Match ( AT1G27340.1 )
(BLAST)

001: MEEELAMLRQ LIGQLQELLH NGSPPPPSSS SSLSSSSPSF LVLHHPQYQN GWCLPCIEDT SADDCCDIVM AGGKRPGIFK MLETVKPPVK RTRKERTQGK
101: SCTEVDEISG NMDQEIWQEF PQDLFEDVVS RLPMATFFQF RAVCRKWNAL IDSDSFSRCF TELPQTIPWF YTITHENVNS GQVYDPSLKK WHHPIIPALP
201: KKSIVLPMAS AGGLVCFLDI GHRNFYVSNP LTKSFRELPA RSFKVWSRVA VGMTLNGNST SHGYKVLWVG CEGEYEVYDS LSNVWTKRGT IPSNIKLPVL
301: LNFKSQPVAI HSTLYFMLTD PEGILSYDMV SGKWKQFIIP GPPDLSDHTL AACGERLMLV GLLTKNAATC VCIWELQKMT LLWKEVDRMP NIWCLEFYGK
401: HIRMNCLGNK GCLILLSLRS RQMNRLITYN AVTREWTKVP GCTVPRGRKR LWIACGTAFH PSPTARA

Arabidopsis Description

FBX6F-box only protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZK1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.