Factsheet for Bra032820.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra014519.1-P
Bra015801.1-P
Bra039504.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27340.1	Bra003735.1-P	AT1G75950.1	12795696
AT1G27340.1	Bra008231.1-P	AT1G75950.1	12795696
AT1G27340.1	Bra015801.1-P	AT1G75950.1	12795696
AT1G27340.1	Bra039504.1-P	AT2G03160.1	12795696
AT1G27340.1	Bra014519.1-P	AT3G21850.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27608	Canola	nucleus	100.0	100.0
AT1G27340.1	Thale cress	cytosol	88.17	87.79
Bra030038.1-P	Field mustard	nucleus, plastid	82.58	83.12
KRH31515	Soybean	cytosol	63.23	65.33
PGSC0003DMT400084722	Potato	cytosol, mitochondrion	64.95	64.81
Solyc05g015520.2.1	Tomato	cytosol	64.95	64.81
GSMUA_AchrUn_...	Banana	cytosol	53.55	64.68
VIT_01s0010g03730.t01	Wine grape	cytosol	63.23	64.62
KRG97395	Soybean	cytosol	64.09	64.5
KRH42677	Soybean	cytosol, nucleus, plasma membrane	58.49	60.04
KRH58777	Soybean	cytosol	58.06	59.47
EES04122	Sorghum	cytosol	55.27	58.14
Zm00001d011994_P001	Maize	cytosol	55.05	57.79
Os01t0923900-01	Rice	cytosol	54.84	57.56
TraesCS3B01G470300.2	Wheat	cytosol	53.76	55.93
TraesCS3D01G428200.2	Wheat	cytosol	53.76	55.93
TraesCS3A01G435400.2	Wheat	cytosol	53.55	55.7
Zm00001d042309_P001	Maize	cytosol	53.76	52.97
Bra007616.1-P	Field mustard	cytosol	21.51	24.75
Bra011423.1-P	Field mustard	nucleus	20.86	23.77
Bra037018.1-P	Field mustard	cytosol	19.57	23.16
Bra014429.1-P	Field mustard	cytosol	20.86	23.04
Bra003458.1-P	Field mustard	nucleus	20.22	23.04
Bra006317.1-P	Field mustard	cytosol, plastid	21.51	22.99
Bra027473.1-P	Field mustard	plastid	17.2	22.41
Bra039878.1-P	Field mustard	plastid	20.22	21.12

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra032820	EnsemblPlants:Bra032820.1	EnsemblPlants:Bra032820.1-P
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:Gal_Oxase/kelch_b-propeller
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	UniProt:M4EVI7	PFAM:PF00646	PFscan:PS50181
PANTHER:PTHR44829	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383	UniParc:UPI00025425F1	SEG:seg

Description

AT1G27340 (E=1e-240) | F-box family protein

Coordinates

chrA09:-:12606023..12607926

Molecular Weight (calculated)

52769.7 Da

IEP (calculated)

8.571

GRAVY (calculated)

-0.310

Length

465 amino acids

Sequence
(BLAST)

001: MEEELAMLKQ FIGQLQELLH NGSHPPSSPP SSSSSSSSFI VLHNPHYHNR WCSPFTEETS TDDSCDILMA PGKRPPGIFN MLETVKQPVK RSRKDKKNQG
101: KSSTEGDGNM DQEIWQEFPH DLFESVVSRL PIPKFFQFRA VCRKWNALID SDSFSRCCTD LPQTIPWFYT ITHENVNSGQ LYDPSSEKWH HPIIPSLPKK
201: TIVLPMASAG GLVCFLDIGH RNFYVSNPLT KSFRELPARS FKVWSRVAVG MTLNGNSTSD GYKVLWVGCE GEYEVYDSLS NVWTKRGTIP SNIKLPVLLN
301: FKSQPVAIQT TLYFMLTEPE GILSYDMVSG KWKQYVIPGP PDLSDLTLAE CGERLMLVGL LTKNAATCVC IWELQKMTLL WKEVDRMPNI WCLEFYGKHV
401: RMNCLGNKGC LMMLSLRSRQ MNRLITYNAV TREWSKVPGC TVPRGRKRLW IACGTAFHPS PTARA

Best Arabidopsis Sequence Match ( AT1G27340.1 )
(BLAST)

001: MEEELAMLRQ LIGQLQELLH NGSPPPPSSS SSLSSSSPSF LVLHHPQYQN GWCLPCIEDT SADDCCDIVM AGGKRPGIFK MLETVKPPVK RTRKERTQGK
101: SCTEVDEISG NMDQEIWQEF PQDLFEDVVS RLPMATFFQF RAVCRKWNAL IDSDSFSRCF TELPQTIPWF YTITHENVNS GQVYDPSLKK WHHPIIPALP
201: KKSIVLPMAS AGGLVCFLDI GHRNFYVSNP LTKSFRELPA RSFKVWSRVA VGMTLNGNST SHGYKVLWVG CEGEYEVYDS LSNVWTKRGT IPSNIKLPVL
301: LNFKSQPVAI HSTLYFMLTD PEGILSYDMV SGKWKQFIIP GPPDLSDHTL AACGERLMLV GLLTKNAATC VCIWELQKMT LLWKEVDRMP NIWCLEFYGK
401: HIRMNCLGNK GCLILLSLRS RQMNRLITYN AVTREWTKVP GCTVPRGRKR LWIACGTAFH PSPTARA

Arabidopsis Description

FBX6F-box only protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZK1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.