Factsheet for Bra011423.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75335	Canola	nucleus	97.3	97.3
Bra037018.1-P	Field mustard	cytosol	75.74	78.63
AT4G33160.2	Thale cress	cytosol	77.94	61.39
KRH15707	Soybean	cytosol	53.19	53.32
KRH05328	Soybean	cytosol	52.94	53.07
VIT_04s0008g03190.t01	Wine grape	cytosol	51.23	51.35
KRH61620	Soybean	cytosol	50.49	49.88
GSMUA_Achr7P11470_001	Banana	nucleus	41.67	48.3
KRH52288	Soybean	cytosol	48.53	47.94
GSMUA_Achr10P...	Banana	cytosol	48.28	47.93
PGSC0003DMT400019032	Potato	nucleus	47.06	45.93
Solyc08g067300.1.1	Tomato	nucleus	46.32	45.65
Zm00001d029442_P001	Maize	cytosol, nucleus, plastid	39.71	40.4
Os03t0399400-01	Rice	mitochondrion	39.46	39.46
KXG39191	Sorghum	nucleus	40.2	39.05
OQU90263	Sorghum	cytosol, mitochondrion, plastid	39.22	38.84
Zm00001d022151_P001	Maize	cytosol, mitochondrion, plastid	39.22	38.55
Os07t0617700-01	Rice	cytosol	38.24	38.42
TraesCS2A01G167400.1	Wheat	cytosol	38.97	38.13
TraesCS5B01G100300.1	Wheat	cytosol, plastid	37.5	38.06
Zm00001d006874_P001	Maize	cytosol	37.75	38.02
TraesCS2B01G193700.1	Wheat	cytosol	38.48	37.83
TraesCS2D01G175100.1	Wheat	cytosol	38.48	37.65
TraesCS5D01G106500.1	Wheat	cytosol	37.75	34.22
TraesCS5A01G094200.1	Wheat	cytosol	37.5	33.85
HORVU5Hr1G025530.5	Barley	cytosol	31.13	31.28
HORVU2Hr1G030810.1	Barley	plastid	38.24	28.57
Bra007616.1-P	Field mustard	cytosol	22.3	22.52
Bra030038.1-P	Field mustard	nucleus, plastid	24.51	21.64
Bra003458.1-P	Field mustard	nucleus	21.08	21.08
Bra014429.1-P	Field mustard	cytosol	21.57	20.9
Bra032820.1-P	Field mustard	nucleus	23.77	20.86
Bra006317.1-P	Field mustard	cytosol, plastid	21.08	19.77
Bra027473.1-P	Field mustard	plastid	16.91	19.33
Bra039878.1-P	Field mustard	plastid	20.59	18.88

Protein Annotations

EnsemblPlants:Bra011423.1	EnsemblPlants:Bra011423.1-P	EnsemblPlantsGene:Bra011423	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:Gal_Oxase/kelch_b-propeller	InterPro:IPR001810	PANTHER:PTHR45094
PANTHER:PTHR45094:SF2	PFAM:PF00646	PFscan:PS50181	SMART:SM00256	SUPFAM:SSF50965	SUPFAM:SSF81383
UniParc:UPI0002545E98	UniProt:M4D4L9	MapMan:35.1	:	:	:

Description

AT4G33160 (E=8e-184) | ubiquitin-protein ligase

Coordinates

chrA01:-:2240096..2241322

Molecular Weight (calculated)

45663.8 Da

IEP (calculated)

4.935

GRAVY (calculated)

-0.234

Length

408 amino acids

Sequence
(BLAST)

001: MGFSAGKRKS RDEQDYTVTL ASTAFPMDDL SDDVLERVLS WLPTSSFLRM TSVCKRWKST KTSKSFNLAC SQVPLRDPWF FMITNDSKSS TFVYDSTENS
101: WKSLNHNRNR RDFIPVASSG GLLCFRCSVS GGFLLCNPIT GSSRDLPSPI SDDNSKPLQA VAMTALTPSS YKLVTISGEA PNLCFRFYES DSGSWSKELN
201: LVKKNDGDEY NDDNDSGTVY FLSKTGHVVV ASNNLQRSPS KQYSSVITVK DNAETVYFLS SHGTIIACDL TNKCYTELPK LLPTFLEYSI DLVECNGTMF
301: VVLLSEFYES ASLRIWKLEN QSWVHVAMLP PAMSHELYGR EGDINCVGGA DDKILVCFNT SPPEVYCRYF VYDLVAQEWS ELPKCFKDGE AVEFVSALSF
401: QPRIEATV

Best Arabidopsis Sequence Match ( AT4G33160.2 )
(BLAST)

001: MFTGYSFGFG DSSEEEVAQH TIFPFLLVSL SPQEYLLCRG LSTLFDRGAQ EASLLSLSLS SMPSSATSTY LLSLKQVSLT ASSPLLLQLK DRFFHQPKLL
101: NMGFSTGKRK SRDEEEDRVS FFASEFPMDD LNDDVLERVL SWLPTSCFFR MSSVCKRWKS SQTSKSFKLA CSQIPTRDPW FFMIDNDSNS SSFVFDSTEN
201: SWKNLNRRDF LHHHRQDFIP VASSGGLLCY RCSISGDFLL RNPLTGSSRD IPSQDNNNNK PLQAVAMTTT TVTPSSYTLV TISGEIPNLS FKIYESNADS
301: WSKDQELESV KNNDSSLHDD YDTDSGTVYF LSKQGNVVVA SNNLQRSPSK QYSSVITVTD EAEIVYFLSS YGTIVACDLT KRCFTELPKL LPPFLEYSID
401: LVECEGTMYV ILLSEFFESA SLRIWRLDNN REWVQVGMLP PALSHELYGK KGDINCVGGA GNKILVCFNA SPPEVYCRYF VYDLVAEEWN ELPKCFKDGE
501: AVDFVSALSF QPRIEATV

Arabidopsis Description

F-box family protein [Source:TAIR;Acc:AT4G33160]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.