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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 3
  • mitochondrion 5
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY32964 Canola plastid 86.6 87.69
Bra027473.1-P Field mustard plastid 77.67 87.68
CDY43599 Canola plastid 87.59 87.59
KRH61403 Soybean plastid 45.41 50.97
PGSC0003DMT400027543 Potato cytosol 48.14 50.92
KRH15449 Soybean cytosol, mitochondrion, nucleus 47.15 48.97
KRH52086 Soybean plastid 40.69 47.13
VIT_18s0001g09110.t01 Wine grape plasma membrane 48.88 37.81
AT1G27340.1 Thale cress cytosol 23.08 19.91
AT5G15710.2 Thale cress cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, peroxisome, plasma membrane, plastid, vacuole 21.09 18.97
AT3G61590.4 Thale cress plasma membrane 20.35 18.34
AT1G30950.1 Thale cress plastid 18.86 17.19
AT4G33160.2 Thale cress cytosol 20.35 15.83
Protein Annotations
Gene3D:1.20.1280.50MapMan:35.1EntrezGene:834337ProteinID:AED94922.1EMBL:AK227592ArrayExpress:AT5G43190
EnsemblPlantsGene:AT5G43190RefSeq:AT5G43190TAIR:AT5G43190RefSeq:AT5G43190-TAIR-GEnsemblPlants:AT5G43190.1TAIR:AT5G43190.1
ProteinID:BAB10582.1EMBL:BT003084InterPro:F-box-assoc_interact_domInterPro:F-box-like_dom_sfInterPro:F-box_domGO:GO:0003674
GO:GO:0003824GO:GO:0004842GO:GO:0005488GO:GO:0005515GO:GO:0006464GO:GO:0008150
GO:GO:0008152GO:GO:0009056GO:GO:0009987GO:GO:0016567GO:GO:0016740GO:GO:0019538
GO:GO:0031146InterPro:Gal_Oxase/kelch_b-propellerInterPro:IPR001810InterPro:Kelch_2RefSeq:NP_568622.1PFAM:PF00646
PFAM:PF07646PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230PO:PO:0000293
PO:PO:0001016PO:PO:0001017PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025195PO:PO:0025281PFscan:PS50181
PANTHER:PTHR44829UniProt:Q9FHS6SMART:SM00256SUPFAM:SSF50965SUPFAM:SSF81383TIGRFAMs:TIGR01640
UniParc:UPI000000BED4SEG:seg::::
Description
F-box/kelch-repeat protein At5g43190 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHS6]
Coordinates
chr5:-:17340071..17341814
Molecular Weight (calculated)
45449.5 Da
IEP (calculated)
8.280
GRAVY (calculated)
0.042
Length
403 amino acids
Sequence
(BLAST)
001: MFRLRAHGKK PITITTTTTT TASTFLYWSP ESSPTALSSP TNLDPNIWSN LPNHLLEHIL SLLPFKTLLT LRSISRHLRS LILSPSFISD HSFSLPSFLL
101: LSHPQSFNSF PLFNPNLISW CTLPLPRSLS LTCASSLLSS SNGLLCFSLS PSSVSSLSIF NPLTRSSRSI KLPCYPFPFE LLSLVTSPKG YKIFTLCSSS
201: SAASSRSVCL YDSGDRSWRK FGGVDQVLPR GFNQDGVFYN GSLYFARSEP FLIVSVDLND GKWTTATGDG VFPADDEITF ARLVSDPEKK ILYMVGGIGS
301: NGICRSIKIW EFKEETESWI EVETLPDIVC RKFTSVCYHN YEHVYCLWHK EMICVCCYNW PEILFFHVGR RTWHWVPKCP SLPEKWSCGF RWFSFVPSLS
401: ASV
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.