CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68078
CDX73462
CDX74458
CDX74459
CDX78253
CDX83577
CDX86323
CDX86535
CDX90932
CDX93984
CDX93985
CDX99734
CDY00072
CDY00432
CDY01803
CDY03475
CDY04188
CDY04674
CDY05699
CDY07427
CDY08175
CDY09428
CDY10172
CDY12640
CDY13604
CDY15562
CDY17656
CDY17657
CDY18013
CDY19964
CDY21896
CDY22051
CDY22060
CDY28891
CDY30238
CDY30239
CDY34266
CDY36244
CDY39176
CDY40985
CDY47716
CDY48198
CDY48199
CDY48548
CDY48737
CDY48808
CDY49755
CDY50384
CDY51342
CDY54510
CDY55831
CDY58541
CDY64339
CDY64738
CDY66300
CDY69654
CDY69799
CDY70354

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20140.1	CDX86535	AT1G06110.1	12169662
AT1G20140.1	CDY10172	AT1G06110.1	12169662
AT1G20140.1	CDY15562	AT1G06110.1	12169662
AT1G20140.1	CDY47716	AT1G06110.1	12169662
AT1G20140.1	CDX86535	AT1G06110.1	21798944
AT1G20140.1	CDY10172	AT1G06110.1	21798944
AT1G20140.1	CDY15562	AT1G06110.1	21798944
AT1G20140.1	CDY47716	AT1G06110.1	21798944
AT1G20140.1	CDY04674	AT1G21760.1	12169662
AT1G20140.1	CDY08175	AT1G21760.1	12169662
AT1G20140.1	CDY01803	AT1G67340.1	12169662
AT1G20140.1	CDY07427	AT1G67340.1	12169662
AT1G20140.1	CDY12640	AT1G67340.1	12169662
AT1G20140.1	CDY28891	AT1G67340.1	12169662
AT1G20140.1	CDY51342	AT1G67340.1	12169662
AT1G20140.1	CDY70354	AT1G67340.1	12169662
AT1G20140.1	CDX68078	AT1G76920.1	12795696
AT1G20140.1	CDY48548	AT1G76920.1	12795696
AT1G20140.1	CDY09428	AT2G01620.1	12795696
AT1G20140.1	CDY17656	AT2G01620.1	12795696
AT1G20140.1	CDY17657	AT2G01620.1	12795696
AT1G20140.1	CDY36244	AT2G01620.1	12795696
AT1G20140.1	CDY48808	AT2G01620.1	12795696
AT1G20140.1	CDY49755	AT2G01620.1	12795696
AT1G20140.1	CDX83577	AT3G26000.1	12795696
AT1G20140.1	CDX99734	AT3G26000.1	12795696
AT1G20140.1	CDY04188	AT3G26000.1	12795696
AT1G20140.1	CDY13604	AT3G26000.1	12795696
AT1G20140.1	CDY39176	AT3G26000.1	12795696
AT1G20140.1	CDY40985	AT3G26000.1	12795696
AT1G20140.1	CDX93984	AT3G62230.1	12169662
AT1G20140.1	CDX93985	AT3G62230.1	12169662
AT1G20140.1	CDY66300	AT3G62230.1	12169662
AT1G20140.1	CDY22051	AT4G02440.1	16412087
AT1G20140.1	CDY50384	AT4G02440.1	16412087
AT1G20140.1	CDY22051	AT4G02440.1	21798944
AT1G20140.1	CDY50384	AT4G02440.1	21798944
AT1G20140.1	CDX90932	AT4G02570.1	16412087
AT1G20140.1	CDY18013	AT4G02570.1	16412087
AT1G20140.1	CDY21896	AT4G02570.1	16412087
AT1G20140.1	CDY22060	AT4G02570.1	16412087
AT1G20140.1	CDY03475	AT4G24210.1	15161962
AT1G20140.1	CDY34266	AT4G24210.1	15161962
AT1G20140.1	CDX74458	AT5G39450.1	21798944
AT1G20140.1	CDX74459	AT5G39450.1	21798944
AT1G20140.1	CDY30238	AT5G39450.1	21798944
AT1G20140.1	CDY30239	AT5G39450.1	21798944
AT1G20140.1	CDX86323	AT5G48170.1	15161962
AT1G20140.1	CDY00072	AT5G48170.1	15161962
AT1G20140.1	CDY05699	AT5G48170.1	15161962
AT1G20140.1	CDY19964	AT5G48170.1	15161962
AT1G20140.1	CDY48737	AT5G48170.1	15161962
AT1G20140.1	CDY54510	AT5G48170.1	15161962
AT2G25700.1	CDY00432	AT2G04230.1	21798944
AT2G25700.1	CDY48198	AT2G04230.1	21798944
AT2G25700.1	CDY48199	AT2G04230.1	21798944
AT2G25700.1	CDY69654	AT2G04230.1	21798944
AT2G25700.1	CDY69799	AT2G04230.1	21798944
AT2G25700.1	CDY58541	AT3G03030.1	21798944
AT2G25700.1	CDX83577	AT3G26000.1	12795696
AT2G25700.1	CDX99734	AT3G26000.1	12795696
AT2G25700.1	CDY04188	AT3G26000.1	12795696
AT2G25700.1	CDY13604	AT3G26000.1	12795696
AT2G25700.1	CDY39176	AT3G26000.1	12795696
AT2G25700.1	CDY40985	AT3G26000.1	12795696
AT2G25700.1	CDX73462	AT3G54650.1	19277118
AT2G25700.1	CDX78253	AT3G54650.1	19277118
AT2G25700.1	CDY55831	AT3G54650.1	19277118
AT2G25700.1	CDY64339	AT3G54650.1	19277118
AT2G25700.1	CDX90932	AT4G02570.1	16412087
AT2G25700.1	CDY18013	AT4G02570.1	16412087
AT2G25700.1	CDY21896	AT4G02570.1	16412087
AT2G25700.1	CDY22060	AT4G02570.1	16412087
AT2G25700.1	CDY64738	AT4G10400.1	21798944
AT2G25700.1	CDY03475	AT4G24210.1	15161962
AT2G25700.1	CDY34266	AT4G24210.1	15161962
AT2G25700.1	CDX86323	AT5G48170.1	15161962
AT2G25700.1	CDY00072	AT5G48170.1	15161962
AT2G25700.1	CDY05699	AT5G48170.1	15161962
AT2G25700.1	CDY19964	AT5G48170.1	15161962
AT2G25700.1	CDY48737	AT5G48170.1	15161962
AT2G25700.1	CDY54510	AT5G48170.1	15161962

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025795.1-P	Field mustard	cytosol	100.0	100.0
CDY44209	Canola	cytosol	96.27	96.27
AT1G20140.1	Thale cress	cytosol	80.75	79.75
AT2G25700.1	Thale cress	cytosol	80.12	79.14
CDX68112	Canola	cytosol	70.19	74.83
CDX85931	Canola	cytosol	70.19	74.83
CDY39073	Canola	cytosol	73.91	74.38
CDY13521	Canola	cytosol	73.91	74.38
CDY67544	Canola	cytosol	71.43	71.43
CDY01389	Canola	cytosol	70.81	70.81
CDY63159	Canola	cytosol	70.19	70.19
CDX73212	Canola	cytosol	69.57	69.57
CDX87650	Canola	cytosol	68.94	68.94
CDY40611	Canola	cytosol	59.01	63.33
CDY40610	Canola	cytosol	60.25	62.18
CDX93699	Canola	cytosol	61.49	61.88
CDX93698	Canola	cytosol	59.63	61.54
CDY43408	Canola	cytosol	56.52	59.87
CDX80590	Canola	cytosol	59.63	59.63
CDY68971	Canola	cytosol	55.9	59.21
CDX77280	Canola	cytosol	57.14	57.86
CDY16470	Canola	cytosol	55.9	56.6
CDY69121	Canola	cytosol	44.72	54.96
CDX89042	Canola	cytosol	52.17	52.83
CDY03015	Canola	cytosol	49.07	52.32
CDY14922	Canola	cytosol	53.42	51.19
CDY45767	Canola	cytosol	48.45	50.65
CDY04140	Canola	cytosol	49.07	49.69
CDY17409	Canola	cytosol	47.83	48.43
CDX96963	Canola	cytosol	52.8	44.97

Protein Annotations

MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	GO:A0A078GSA2	UniProt:A0A078GSA2	EnsemblPlants:CDY29370	ProteinID:CDY29370
ProteinID:CDY29370.1	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00042949001	PFAM:PF01466	PFAM:PF03931	PIRSF:PIRSF028729	PANTHER:PTHR11165
PANTHER:PTHR11165:SF89	InterPro:SKP1	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512
SUPFAM:SSF54695	SUPFAM:SSF81382	InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	UniPathway:UPA00143	UniParc:UPI000253EEF5

Description

BnaA06g14260DBnaA06g14260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GSA2]

Coordinates

chrLK032236:-:52780..53864

Molecular Weight (calculated)

17949.1 Da

IEP (calculated)

4.184

GRAVY (calculated)

-0.365

Length

161 amino acids

Sequence
(BLAST)

001: MSKKIILKSS DGESFEVDQA VALESQTIKH MVEDDCVADG IPLPNVTSAI LAKVIEYCKK HVDAAAEANA GDKDIYGNTE DTELKNWDTE FAKVDQPTLF
101: DLILAANYLN ITGLLDLTCK TVADMMVGKT PEQMREHFNI KNDYTAEEEA EVRKENAWAF E

Best Arabidopsis Sequence Match ( AT1G20140.1 )
(BLAST)

001: MAETKKMIIL KSSDGESFEI EEAVAVKSQT IKHMIEDDCA DNGIPLPNVT GAILAKVIEY CKKHVEAAAE AGGDKDFYGS AENDELKNWD SEFVKVDQPT
101: LFDLILAANY LNIGGLLDLT CKAVADQMRG KTPEQMRAHF NIKNDYTPEE EAEVRNENKW AFE

Arabidopsis Description

ASK4SK4 [Source:UniProtKB/TrEMBL;Acc:A0A178W187]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.