CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48198	Canola	cytosol	17.95	74.78
CDY69799	Canola	cytosol	59.92	74.74
CDY69654	Canola	cytosol	47.6	71.03
AT3G49030.1	Thale cress	cytosol	53.44	57.79
AT2G04230.1	Thale cress	cytosol	52.19	55.8
CDY00432	Canola	cytosol	28.18	54.0
CDY48007	Canola	plastid	47.81	52.28
CDX93829	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	45.72	52.27
CDY37901	Canola	cytosol	26.72	52.24
CDY48010	Canola	cytosol	48.85	52.12
CDY37900	Canola	cytosol, extracellular, nucleus	13.78	51.16
CDY01270	Canola	extracellular, plasma membrane	30.27	50.17
CDY13667	Canola	extracellular, plasma membrane	28.39	49.1
CDX73615	Canola	cytosol	38.2	48.93
CDX83661	Canola	cytosol, mitochondrion, nucleus	40.08	48.0
CDX78112	Canola	cytosol	42.8	47.9
CDX87122	Canola	cytosol	37.79	47.88
CDX76220	Canola	endoplasmic reticulum, extracellular	15.03	47.68
CDX83662	Canola	cytosol, plastid	40.92	47.34
CDY00181	Canola	plasma membrane, plastid, vacuole	41.96	47.18
CDY23229	Canola	cytosol	41.34	46.15
CDY23230	Canola	cytosol	41.13	45.92
CDY63198	Canola	mitochondrion, plasma membrane	43.63	45.63
CDY72188	Canola	cytosol	40.71	45.45
CDX89785	Canola	cytosol, extracellular, nucleus	32.36	44.54
CDX95363	Canola	cytosol	38.83	44.39
CDX88297	Canola	cytosol	21.5	43.83
CDY00182	Canola	cytosol	7.31	43.21
CDX89356	Canola	cytosol, extracellular, mitochondrion, plastid	31.94	42.03
CDY27513	Canola	cytosol	50.73	41.97
CDX94363	Canola	cytosol	31.73	41.76
CDY65918	Canola	cytosol	35.91	40.19
CDX94344	Canola	cytosol, peroxisome, plastid	34.24	39.14
CDX89345	Canola	cytosol, peroxisome, plastid	32.99	37.98
CDY42742	Canola	cytosol	32.15	36.58
CDX92699	Canola	cytosol	23.8	36.42
CDY65306	Canola	cytosol	24.43	36.11
CDX92766	Canola	cytosol	15.66	36.06
CDY65463	Canola	cytosol, extracellular, nucleus	12.11	35.8
CDX71950	Canola	cytosol	8.98	32.33
CDY52334	Canola	cytosol, nucleus, vacuole	29.65	32.2
CDX80649	Canola	cytosol	28.39	31.48
CDY06036	Canola	cytosol	28.18	31.25
CDX92764	Canola	cytosol, nucleus, plasma membrane	13.99	26.48
CDX71951	Canola	plastid	24.22	21.89
CDY30423	Canola	extracellular, golgi	7.93	17.43
CDY41819	Canola	cytosol	1.04	7.04

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078IFT4	EnsemblPlants:CDY48199	ProteinID:CDY48199	ProteinID:CDY48199.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00089017001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PFAM:PF00646
PFAM:PF07723	PFAM:PF08387	PFscan:PS50181	PANTHER:PTHR32212	PANTHER:PTHR32212:SF234	SMART:SM00256
SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383	SignalP:SignalP-noTM	UniParc:UPI0004EDE308	:

Description

BnaA04g15630DBnaA04g15630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IFT4]

Coordinates

chrLK032758:+:144190..146177

Molecular Weight (calculated)

54822.1 Da

IEP (calculated)

6.686

GRAVY (calculated)

0.076

Length

479 amino acids

Sequence
(BLAST)

001: MTSHLFSLQI LCTFPLCFSA VLCVRLCVLN LKEGIIVVSV DTEMEQKRKI GGESLRNRDA KDMISELPEA LLLQILSSVP TKDVIATSVL SKRWKSVWKM
101: VQKLKFESEI DHVSSEDVYR LLIMHKAPFL ESLHLKIEDT SGRLDIGILI GIAFSRHVRE LVLDLFHDDQ EKVRFPSGLC SYNNTLEVLK FKYVLLDFPS
201: RVCFNALREL HLFHVVFKNE ASVCNLLSGC PRLQDLVVER NSNLDVETYT IAVPSLQRLT IEENYYATEL SGGGYVINAP SLKYLNIQCL DHIDFCLIEN
301: APELVEAKIL DVSHIPNENI LASLTSAKCL SLHLPSEIKY PTGSIFFQLV SLEVYIDKIN WWNLLSFMLD SSPKLQILKL FGLCREECPV GWEWNQPKCV
401: PECLLLHLET LVWTRYVWGR ADTKQVATYI LKNARQLKKA TLSTPYIEPK MLKTRREMLN ELDSVVRASK SCHLVFEPE

Best Arabidopsis Sequence Match ( AT3G49020.1 )
(BLAST)

001: MEQKCKIGGE GLRNRGLVNE EDRISELPEA LLLLILSSLP TETVIATSVL SKQWKSLWKL VPNLKFDSKY HYHYTFSDNV FRSLISHKAP VLDSLHLKVE
101: DKDDALDVGI LIGIAFSRHM RKFVLKITLL EESFVRFPSA WCSCNDTLEI LELKYCILLD FPSLVCLKSL RKLYLYHVRF NDEESVCNLL CGCPSLEDLV
201: VHRHSTTDVE SYTIAVPSLQ RLTIYDDYYG EGVGGYVINA PSLKYLNIDG FNGLEFCLIE KAPELVEAKI SAVFEIANEN IMDSLTSAKC LSLHLAPFKI
301: KYPTGKIFYQ LLSLELRAYS YEWWNLLWFM LDSSPKLQIL KLVDPYQFPK EDCSVGWEWS RPKCVPECLL FHLETFVWTR YEWQREDEKA VATYILKNAR
401: CLKKATLSTK PIGSEELEKL GKRREMLNEL ATQASPSNSC NLVFESE

Arabidopsis Description

FBD-associated F-box protein At3g49020 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMT9]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.