CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040480.1-P	Field mustard	cytosol	93.76	76.97
CDY48007	Canola	plastid	67.48	69.18
CDY48198	Canola	cytosol	15.14	59.13
CDY69654	Canola	cytosol	39.2	54.83
CDY27513	Canola	cytosol	68.6	53.2
CDY69799	Canola	cytosol	43.43	50.78
CDY37901	Canola	cytosol	26.95	49.39
CDY48199	Canola	extracellular, plasma membrane, vacuole	52.12	48.85
CDX93829	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	45.21	48.45
CDY00182	Canola	cytosol	8.69	48.15
CDY13667	Canola	extracellular, plasma membrane	29.62	48.01
CDX78112	Canola	cytosol	45.66	47.9
CDX87122	Canola	cytosol	40.09	47.62
CDX73615	Canola	cytosol	39.64	47.59
CDY37900	Canola	cytosol, extracellular, nucleus	13.59	47.29
CDY00181	Canola	plasma membrane, plastid, vacuole	44.77	47.18
CDY00432	Canola	cytosol	25.84	46.4
CDY01270	Canola	extracellular, plasma membrane	29.84	46.37
CDX89785	Canola	cytosol, extracellular, nucleus	34.97	45.11
CDX89356	Canola	cytosol, extracellular, mitochondrion, plastid	36.53	45.05
CDX76220	Canola	endoplasmic reticulum, extracellular	15.14	45.03
CDY63198	Canola	mitochondrion, plasma membrane	44.99	44.1
CDY23229	Canola	cytosol	42.09	44.06
CDY72188	Canola	cytosol	42.09	44.06
CDX83662	Canola	cytosol, plastid	40.53	43.96
CDX83661	Canola	cytosol, mitochondrion, nucleus	38.98	43.75
CDY23230	Canola	cytosol	41.65	43.59
CDX94363	Canola	cytosol	35.19	43.41
CDX88297	Canola	cytosol	22.72	43.4
CDX95363	Canola	cytosol	40.09	42.96
CDY65918	Canola	cytosol	37.19	39.02
CDX94344	Canola	cytosol, peroxisome, plastid	36.08	38.66
CDX92766	Canola	cytosol	17.82	38.46
CDX92699	Canola	cytosol	26.5	38.02
CDX89345	Canola	cytosol, peroxisome, plastid	35.19	37.98
CDY42742	Canola	cytosol	35.41	37.77
CDY65306	Canola	cytosol	26.95	37.35
CDY52334	Canola	cytosol, nucleus, vacuole	32.52	33.11
CDX71950	Canola	cytosol	9.8	33.08
CDX80649	Canola	cytosol	31.18	32.41
CDY06036	Canola	cytosol	30.29	31.48
CDY65463	Canola	cytosol, extracellular, nucleus	11.14	30.86
CDX92764	Canola	cytosol, nucleus, plasma membrane	13.14	23.32
CDX71951	Canola	plastid	26.28	22.26
CDY30423	Canola	extracellular, golgi	9.13	18.81
CDY41819	Canola	cytosol	1.56	9.86

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078IAV4	EnsemblPlants:CDY48010	ProteinID:CDY48010	ProteinID:CDY48010.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00088655001	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PFAM:PF00646
PFAM:PF07723	PFAM:PF08387	PFscan:PS50181	PANTHER:PTHR32212	PANTHER:PTHR32212:SF234	SMART:SM00256
SMART:SM00579	SUPFAM:SSF52058	SUPFAM:SSF81383	UniParc:UPI0004EE353E	:	:

Description

BnaA04g26800DBnaA04g26800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IAV4]

Coordinates

chrLK032749:-:53336..55137

Molecular Weight (calculated)

51363.0 Da

IEP (calculated)

5.148

GRAVY (calculated)

-0.017

Length

449 amino acids

Sequence
(BLAST)

001: MMDWISELPR DLIIQILSSL STKDVTATSV LSKSWRSVWK MVPNIKFDSG YHYKTESHSF SEIVCKSLLS CSSPVLESLY LVNIYESEAS DDIELLIGVA
101: FARPVRKLIC NSKYEDDLIR FPSVFSSGNN TLEILELSTM LLDFPCRVGL KSLKKLHLIN VKFRDEESVC NLLCGCPILE DLTVDRRGNY DAETFTIAVP
201: SLQRLTIVDT FQGTANGGYV INAPSLKYLN IKGVGFEWFR GLITLGECYE FFLIENATEL VEAKIIGVIM DIHVHNEDIL ASLASVKRLS LDFSPLKIKC
301: PTGITFYQLV SLELNTRKSE WSNLLARMLD NSPKLQILKL INTANDYNNR TLYSFRLVGE WEKRPKCVPE CLLFHLVTFQ WTNYLWELEE ELEVAKYILK
401: NARWLKKATF YTEPEDVETL EEKREMLNEL ASVVRASNSC HLVFESSSN

Best Arabidopsis Sequence Match ( AT3G49020.1 )
(BLAST)

001: MEQKCKIGGE GLRNRGLVNE EDRISELPEA LLLLILSSLP TETVIATSVL SKQWKSLWKL VPNLKFDSKY HYHYTFSDNV FRSLISHKAP VLDSLHLKVE
101: DKDDALDVGI LIGIAFSRHM RKFVLKITLL EESFVRFPSA WCSCNDTLEI LELKYCILLD FPSLVCLKSL RKLYLYHVRF NDEESVCNLL CGCPSLEDLV
201: VHRHSTTDVE SYTIAVPSLQ RLTIYDDYYG EGVGGYVINA PSLKYLNIDG FNGLEFCLIE KAPELVEAKI SAVFEIANEN IMDSLTSAKC LSLHLAPFKI
301: KYPTGKIFYQ LLSLELRAYS YEWWNLLWFM LDSSPKLQIL KLVDPYQFPK EDCSVGWEWS RPKCVPECLL FHLETFVWTR YEWQREDEKA VATYILKNAR
401: CLKKATLSTK PIGSEELEKL GKRREMLNEL ATQASPSNSC NLVFESE

Arabidopsis Description

FBD-associated F-box protein At3g49020 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMT9]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.