Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48198 | Canola | cytosol | 32.45 | 42.61 |
| CDY00182 | Canola | cytosol | 19.21 | 35.8 |
| CDY37900 | Canola | cytosol, extracellular, nucleus | 30.46 | 35.66 |
| CDY23229 | Canola | cytosol | 85.43 | 30.07 |
| CDY72188 | Canola | cytosol | 84.77 | 29.84 |
| CDY23230 | Canola | cytosol | 84.11 | 29.6 |
| CDX95363 | Canola | cytosol | 69.54 | 25.06 |
| CDX73615 | Canola | cytosol | 54.97 | 22.19 |
| CDX92766 | Canola | cytosol | 28.48 | 20.67 |
| CDX78112 | Canola | cytosol | 56.95 | 20.09 |
| CDX88297 | Canola | cytosol | 30.46 | 19.57 |
| AT3G52680.1 | Thale cress | cytosol | 54.3 | 17.98 |
| AT4G00160.1 | Thale cress | cytosol | 53.64 | 17.88 |
| CDY13667 | Canola | extracellular, plasma membrane | 31.79 | 17.33 |
| CDX89785 | Canola | cytosol, extracellular, nucleus | 39.74 | 17.24 |
| CDX93829 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 47.02 | 16.95 |
| CDY69654 | Canola | cytosol | 34.44 | 16.2 |
| CDX87122 | Canola | cytosol | 38.41 | 15.34 |
| CDY48010 | Canola | cytosol | 45.03 | 15.14 |
| CDY48199 | Canola | extracellular, plasma membrane, vacuole | 47.68 | 15.03 |
| CDY00181 | Canola | plasma membrane, plastid, vacuole | 41.06 | 14.55 |
| CDX89356 | Canola | cytosol, extracellular, mitochondrion, plastid | 33.77 | 14.01 |
| CDY48007 | Canola | plastid | 39.74 | 13.7 |
| CDY00432 | Canola | cytosol | 22.52 | 13.6 |
| CDY63198 | Canola | mitochondrion, plasma membrane | 41.06 | 13.54 |
| CDX94363 | Canola | cytosol | 31.79 | 13.19 |
| CDX92699 | Canola | cytosol | 25.83 | 12.46 |
| CDX83662 | Canola | cytosol, plastid | 33.11 | 12.08 |
| CDX94344 | Canola | cytosol, peroxisome, plastid | 33.11 | 11.93 |
| CDX89345 | Canola | cytosol, peroxisome, plastid | 32.45 | 11.78 |
| CDY65463 | Canola | cytosol, extracellular, nucleus | 12.58 | 11.73 |
| CDY42742 | Canola | cytosol | 31.79 | 11.4 |
| CDX83661 | Canola | cytosol, mitochondrion, nucleus | 29.8 | 11.25 |
| CDY65918 | Canola | cytosol | 29.8 | 10.51 |
| CDY69799 | Canola | cytosol | 26.49 | 10.42 |
| CDY27513 | Canola | cytosol | 39.74 | 10.36 |
| CDY41819 | Canola | cytosol | 4.64 | 9.86 |
| CDY06036 | Canola | cytosol | 25.83 | 9.03 |
| CDY01270 | Canola | extracellular, plasma membrane | 17.22 | 9.0 |
| CDY52334 | Canola | cytosol, nucleus, vacuole | 25.83 | 8.84 |
| CDX80649 | Canola | cytosol | 25.17 | 8.8 |
| CDX71950 | Canola | cytosol | 6.62 | 7.52 |
| CDX71951 | Canola | plastid | 24.5 | 6.98 |
| CDY30423 | Canola | extracellular, golgi | 9.93 | 6.88 |
| CDY37901 | Canola | cytosol | 7.95 | 4.9 |
| CDY65306 | Canola | cytosol | 9.93 | 4.63 |
| CDX92764 | Canola | cytosol, nucleus, plasma membrane | 7.28 | 4.35 |
Protein Annotations
| EnsemblPlants:CDX76220 | EnsemblPlantsGene:GSBRNA2T00126539001 | InterPro:FBD | PANTHER:PTHR32212 | PANTHER:PTHR32212:SF234 | PFAM:PF08387 |
| ProteinID:CDX76220 | ProteinID:CDX76220.1 | SEG:seg | SMART:SM00579 | UniParc:UPI0004EF066C | MapMan:35.1 |
Description
BnaA04g04840D
Coordinates
chrLK031806:+:1916754..1917517
Molecular Weight (calculated)
17527.5 Da
IEP (calculated)
10.370
GRAVY (calculated)
-0.248
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSLTWLIKT LPIYAPGLVA AYIGKVSNVI SEFLVSVRRL VLNVSTSMKY RINPDYHVLG WEWNKPKSVP ECLLSHLETF VWRRYDWKGE KEEEVAIYLL
101: KNARGLKNAT FSTGPIEPGQ LDKLKQRRRT RKKLDGVLKA SNTCHLVFKF E
101: KNARGLKNAT FSTGPIEPGQ LDKLKQRRRT RKKLDGVLKA SNTCHLVFKF E
001: MKLENQSETT ANIQLNAPEL VEANIAEVTS ITIEKFLGSF TSVTRLLLNL SPLKNFHKDG LVSGKWNEPK DVPECLLSQL ETFVWRRLDW GREEEKEIAT
101: YILKNGRRLK KETFTTNPIE SEGLNKLKER LKVLNGLDGV QAPLFRKDGV VVGKWNQPKN VPQCLLSHLE TFVWTRYRWE REEEKEEATY ILKNARLLSK
201: ATFSTNIIDL KEFHWFKK
101: YILKNGRRLK KETFTTNPIE SEGLNKLKER LKVLNGLDGV QAPLFRKDGV VVGKWNQPKN VPQCLLSHLE TFVWTRYRWE REEEKEEATY ILKNARLLSK
201: ATFSTNIIDL KEFHWFKK
Arabidopsis Description
F-box/FBD/LRR protein [Source:UniProtKB/TrEMBL;Acc:Q9M055]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.