Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69799 | Canola | cytosol | 52.24 | 33.33 |
| CDY13667 | Canola | extracellular, plasma membrane | 31.02 | 27.44 |
| CDX87122 | Canola | cytosol | 41.63 | 26.98 |
| CDY48010 | Canola | cytosol | 49.39 | 26.95 |
| CDY48007 | Canola | plastid | 48.16 | 26.94 |
| CDY48199 | Canola | extracellular, plasma membrane, vacuole | 52.24 | 26.72 |
| CDX89785 | Canola | cytosol, extracellular, nucleus | 35.1 | 24.71 |
| CDY69654 | Canola | cytosol | 32.24 | 24.61 |
| CDX83661 | Canola | cytosol, mitochondrion, nucleus | 39.59 | 24.25 |
| CDX78112 | Canola | cytosol | 42.04 | 24.07 |
| CDY65306 | Canola | cytosol | 31.43 | 23.77 |
| CDY01270 | Canola | extracellular, plasma membrane | 27.76 | 23.53 |
| CDY00181 | Canola | plasma membrane, plastid, vacuole | 40.82 | 23.47 |
| CDX83662 | Canola | cytosol, plastid | 39.18 | 23.19 |
| CDX89356 | Canola | cytosol, extracellular, mitochondrion, plastid | 33.88 | 22.8 |
| CDX94363 | Canola | cytosol | 33.47 | 22.53 |
| CDY23229 | Canola | cytosol | 39.18 | 22.38 |
| CDY72188 | Canola | cytosol | 39.18 | 22.38 |
| CDY63198 | Canola | mitochondrion, plasma membrane | 41.63 | 22.27 |
| CDX95363 | Canola | cytosol | 37.55 | 21.96 |
| CDX93829 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 37.55 | 21.96 |
| CDY23230 | Canola | cytosol | 38.37 | 21.91 |
| CDX73615 | Canola | cytosol | 33.06 | 21.66 |
| CDX94344 | Canola | cytosol, peroxisome, plastid | 34.69 | 20.29 |
| CDY27513 | Canola | cytosol | 46.53 | 19.69 |
| CDX89345 | Canola | cytosol, peroxisome, plastid | 33.06 | 19.47 |
| CDX92699 | Canola | cytosol | 24.49 | 19.17 |
| CDY42742 | Canola | cytosol | 32.65 | 19.0 |
| CDX92764 | Canola | cytosol, nucleus, plasma membrane | 19.59 | 18.97 |
| CDY65918 | Canola | cytosol | 31.84 | 18.22 |
| CDY52334 | Canola | cytosol, nucleus, vacuole | 31.02 | 17.23 |
| CDY00432 | Canola | cytosol | 17.55 | 17.2 |
| CDY06036 | Canola | cytosol | 30.2 | 17.13 |
| CDX80649 | Canola | cytosol | 30.2 | 17.13 |
| CDX71950 | Canola | cytosol | 8.98 | 16.54 |
| CDY65463 | Canola | cytosol, extracellular, nucleus | 8.98 | 13.58 |
| CDX92766 | Canola | cytosol | 11.02 | 12.98 |
| CDY30423 | Canola | extracellular, golgi | 10.61 | 11.93 |
| CDX71951 | Canola | plastid | 25.31 | 11.7 |
| CDX76220 | Canola | endoplasmic reticulum, extracellular | 4.9 | 7.95 |
| AT3G55670.1 | Thale cress | cytosol | 6.53 | 7.34 |
| CDX88297 | Canola | cytosol | 5.31 | 5.53 |
| CDY41819 | Canola | cytosol | 0.82 | 2.82 |
| CDY48198 | Canola | cytosol | 0.41 | 0.87 |
| CDY37900 | Canola | cytosol, extracellular, nucleus | 0.41 | 0.78 |
| CDY00182 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY37901 | EnsemblPlantsGene:GSBRNA2T00064887001 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 |
| PANTHER:PTHR32212 | PANTHER:PTHR32212:SF234 | PFAM:PF07723 | ProteinID:CDY37901 | ProteinID:CDY37901.1 | SUPFAM:SSF52047 |
| UniParc:UPI0004EF1FDD | UniProt:A0A078HJP2 | MapMan:35.1 | : | : | : |
Description
BnaA06g19160DBnaA06g19160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJP2]
Coordinates
chrLK032411:-:42217..42954
Molecular Weight (calculated)
28323.0 Da
IEP (calculated)
7.810
GRAVY (calculated)
0.313
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MVPNLKFDSY SFSEHVYKSL ALHKAPFLKS LHLKVKHERD ASDVGIWIGV AFARKVRQLI LSVFFMKDSF VRFPSVLCSW NDTLVFLKLK HSILLNFPSR
101: ICLMSLRKLH LHYVMFNDEE SVCNLLSCCP RLEDLIIRGS YVDVKTFTID VPSLQRLIME EDNLVERDGG RYVIKAPSLK YLKMSGFVGR EVLLIENSPE
201: LVEAEIIDIY NIANENILVF LTSAIWFCLH LSPLEVILRF CTFLS
101: ICLMSLRKLH LHYVMFNDEE SVCNLLSCCP RLEDLIIRGS YVDVKTFTID VPSLQRLIME EDNLVERDGG RYVIKAPSLK YLKMSGFVGR EVLLIENSPE
201: LVEAEIIDIY NIANENILVF LTSAIWFCLH LSPLEVILRF CTFLS
001: MEQKFKTDSM NEDRISDLPD ALLLQILSSL PTENAIATSV LSKRWRSLWT MLPKLKFDSN FNPVFDDDNI DPTMFSENVY KTLSLHKAPV LESLHLSFEG
101: RTDCLHVGIW IATAFARGVR KLVLDSFYQE DQTVTLPSVL FSYNDSLEIL KLKCAIDLDF PSRVCLKSLR KLYLDQVHFK DEESVCNLLC GCPSLQDLVV
201: HRYSNADVAT FTIASPSLQR LTIEDLRQEG GYGNGSYVIN APGLKYLNIN GVIDIESCLI DKALELEEAK ISNVSGITNE NILESLTSAK RLILHLSPLE
301: VKVPTGKIFD QLGCLELLTH EREWWNLLSI MLDSSPKLQI LKLTDVYLHD NKTNPDERKW NPPKCAPECL LFHLETFLWI GYEWQRGDEK EVATYILENA
401: RRLKKATFST KRIGREKLED FEKRREMLNE LAIVLWDSNS CHLVFEST
101: RTDCLHVGIW IATAFARGVR KLVLDSFYQE DQTVTLPSVL FSYNDSLEIL KLKCAIDLDF PSRVCLKSLR KLYLDQVHFK DEESVCNLLC GCPSLQDLVV
201: HRYSNADVAT FTIASPSLQR LTIEDLRQEG GYGNGSYVIN APGLKYLNIN GVIDIESCLI DKALELEEAK ISNVSGITNE NILESLTSAK RLILHLSPLE
301: VKVPTGKIFD QLGCLELLTH EREWWNLLSI MLDSSPKLQI LKLTDVYLHD NKTNPDERKW NPPKCAPECL LFHLETFLWI GYEWQRGDEK EVATYILENA
401: RRLKKATFST KRIGREKLED FEKRREMLNE LAIVLWDSNS CHLVFEST
Arabidopsis Description
F-box/FBD/LRR-repeat protein At2g04230 [Source:UniProtKB/Swiss-Prot;Acc:Q6NKX3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.