CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, vacuole
Any Predictor:	cytosol, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007575.1-P	Field mustard	extracellular, vacuole	99.09	99.09
CDY65306	Canola	cytosol	66.21	90.12
CDX71950	Canola	cytosol	21.54	71.43
CDY06036	Canola	cytosol	63.72	65.05
CDX80649	Canola	cytosol	61.45	62.73
CDX94344	Canola	cytosol, peroxisome, plastid	46.94	49.4
CDX89345	Canola	cytosol, peroxisome, plastid	45.35	48.08
CDX92699	Canola	cytosol	34.01	47.92
CDY42742	Canola	cytosol	44.9	47.03
CDX92766	Canola	cytosol	21.32	45.19
AT4G26350.1	Thale cress	cytosol	41.95	42.92
CDY65463	Canola	cytosol, extracellular, nucleus	14.29	38.89
CDX71951	Canola	plastid	45.58	37.92
CDX73615	Canola	cytosol	31.52	37.17
CDY00181	Canola	plasma membrane, plastid, vacuole	33.79	34.98
CDX95363	Canola	cytosol	32.65	34.37
CDX78112	Canola	cytosol	33.33	34.35
CDY23230	Canola	cytosol	33.11	34.03
CDY23229	Canola	cytosol	33.11	34.03
CDY69654	Canola	cytosol	24.72	33.96
CDX83662	Canola	cytosol, plastid	31.75	33.82
CDY72188	Canola	cytosol	32.88	33.8
CDX94363	Canola	cytosol	27.89	33.79
CDX89356	Canola	cytosol, extracellular, mitochondrion, plastid	27.89	33.79
CDY01270	Canola	extracellular, plasma membrane	22.0	33.56
CDY00182	Canola	cytosol	6.12	33.33
CDY69799	Canola	cytosol	29.02	33.33
CDX83661	Canola	cytosol, mitochondrion, nucleus	29.93	33.0
CDY00432	Canola	cytosol	18.59	32.8
CDY48010	Canola	cytosol	33.11	32.52
CDY48198	Canola	cytosol	8.39	32.17
CDY48007	Canola	plastid	31.75	31.96
CDY13667	Canola	extracellular, plasma membrane	19.95	31.77
CDY63198	Canola	mitochondrion, plasma membrane	32.65	31.44
CDX93829	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	29.48	31.03
CDY37901	Canola	cytosol	17.23	31.02
CDX87122	Canola	cytosol	26.53	30.95
CDX88297	Canola	cytosol	16.1	30.21
CDY65918	Canola	cytosol	28.8	29.67
CDY48199	Canola	extracellular, plasma membrane, vacuole	32.2	29.65
CDX89785	Canola	cytosol, extracellular, nucleus	23.36	29.6
CDY37900	Canola	cytosol, extracellular, nucleus	8.39	28.68
CDX92764	Canola	cytosol, nucleus, plasma membrane	15.65	27.27
CDX76220	Canola	endoplasmic reticulum, extracellular	8.84	25.83
CDY27513	Canola	cytosol	33.11	25.22
CDY30423	Canola	extracellular, golgi	6.8	13.76
CDY41819	Canola	cytosol	2.04	12.68

Protein Annotations

EnsemblPlants:CDY52334	EnsemblPlantsGene:GSBRNA2T00006763001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf
InterPro:FBD	PANTHER:PTHR32212	PFAM:PF08387	ProteinID:CDY52334	ProteinID:CDY52334.1	SEG:seg
SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EE6BCC	UniProt:A0A078ISA1	MapMan:35.1

Description

BnaA09g38830DBnaA09g38830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ISA1]

Coordinates

chrLK033079:-:25448..26946

Molecular Weight (calculated)

50667.3 Da

IEP (calculated)

5.443

GRAVY (calculated)

0.023

Length

441 amino acids

Sequence
(BLAST)

001: MDMISQLSDD LLIRILSLVR TKHVMATCCL SKRWLLLWSL VPKLDYDDSS YSDENYATFT QFVYRSLMSN KAPVLESLSL TLGPKCQAVD VGRWIETAVC
101: HRVHALILNY TLPYEEETML SLPSSIYTCE TLETLKLSGC FSLDDIPFSV CLPSLKTLEI INVEVSSLTR LLSGCPNLDS LVVDQEDIDV DIVVPSLRKL
201: NMVNYTGGQK GSGFVIDARS LVALYIKDDV FNDYHRIEYM PKLEKAYVDI TCGVRDHKFL KAFTCARKLS LCLSFLEVLS PRSMIFHNLV YLTLNTCVLG
301: WWDLVTHMLQ DSPKLRFLKL HDEHDLLLTS IEPPDCWKPP SSVPKCLLHT FEAFEWYGYK GRRGDVVMAT YLIEHATWLK EATFFSEESD DKRDRMLEDF
401: TSVAAPSPCF TFYWSWSSDQ GMTYSGYLLR KNKLLGWCYW V

Best Arabidopsis Sequence Match ( AT4G26340.1 )
(BLAST)

001: MDRISQLSDD LLLQILSFIP GKDVVATSLL SKRWQSLWML VSELEYDDSY HTGDYKSFSQ FVYRSLLSNN APVIKHLHLN LGPDCPAIDI GLWIGFALTR
101: RLRQLKINIR TSSNDASFSL PSSLYTSDTL ETLRLINFVL LDVPSSVCLP SLKVLHLKTV DYEDDASLPS LLFGCPNLEE LFVERHDQDL EMDVTFVVPS
201: LRRLSMIDKN YGQCDRYVID VPSLKYLNIT DDAVYDVRQI ENMPELVEAH VDITQGVTHK FLRALTSVRQ LSLCLSLSEV MCPSGIIFSQ LVHLNLSTVV
301: KGWWDLLTSM LQDSPKLQSL KLIDKQHESG LCGIETPIGW KLPSSVPECL LFSLEAFEWI GYKGRRGDRE VATYVLKNAA CLRTAKFSPE STDVGEKYHM
401: LKELASVPTA STSSKLLFD

Arabidopsis Description

F-box/FBD/LRR-repeat protein At4g26340 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1R7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.