Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025236.1-P | Field mustard | cytosol | 97.83 | 73.64 |
| CDX83662 | Canola | cytosol, plastid | 71.12 | 47.58 |
| CDY48198 | Canola | cytosol | 19.49 | 46.96 |
| AT3G26920.3 | Thale cress | cytosol | 55.23 | 45.0 |
| CDX83661 | Canola | cytosol, mitochondrion, nucleus | 64.26 | 44.5 |
| CDY00182 | Canola | cytosol | 12.64 | 43.21 |
| CDY37900 | Canola | cytosol, extracellular, nucleus | 18.77 | 40.31 |
| CDX89785 | Canola | cytosol, extracellular, nucleus | 44.77 | 35.63 |
| CDX87122 | Canola | cytosol | 45.13 | 33.07 |
| AT3G26930.2 | Thale cress | extracellular, peroxisome, plastid | 53.07 | 32.38 |
| CDX89356 | Canola | cytosol, extracellular, mitochondrion, plastid | 41.88 | 31.87 |
| CDX76220 | Canola | endoplasmic reticulum, extracellular | 17.33 | 31.79 |
| CDX94363 | Canola | cytosol | 41.16 | 31.32 |
| CDY37901 | Canola | cytosol | 27.44 | 31.02 |
| CDY00181 | Canola | plasma membrane, plastid, vacuole | 47.29 | 30.75 |
| CDX93829 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 45.85 | 30.31 |
| CDY48007 | Canola | plastid | 47.65 | 30.14 |
| CDY48010 | Canola | cytosol | 48.01 | 29.62 |
| CDY63198 | Canola | mitochondrion, plasma membrane | 48.74 | 29.48 |
| CDY00432 | Canola | cytosol | 25.99 | 28.8 |
| CDY48199 | Canola | extracellular, plasma membrane, vacuole | 49.1 | 28.39 |
| CDY69654 | Canola | cytosol | 32.85 | 28.35 |
| CDX78112 | Canola | cytosol | 43.68 | 28.27 |
| CDY69799 | Canola | cytosol | 38.27 | 27.6 |
| CDY23230 | Canola | cytosol | 42.24 | 27.27 |
| CDY72188 | Canola | cytosol | 42.24 | 27.27 |
| CDY23229 | Canola | cytosol | 42.24 | 27.27 |
| CDX73615 | Canola | cytosol | 36.46 | 27.01 |
| CDX92766 | Canola | cytosol | 19.86 | 26.44 |
| CDX95363 | Canola | cytosol | 38.63 | 25.54 |
| CDY65918 | Canola | cytosol | 38.63 | 25.0 |
| CDY42742 | Canola | cytosol | 37.91 | 24.94 |
| CDX94344 | Canola | cytosol, peroxisome, plastid | 36.82 | 24.34 |
| CDX89345 | Canola | cytosol, peroxisome, plastid | 36.1 | 24.04 |
| CDX92699 | Canola | cytosol | 27.08 | 23.96 |
| CDX88297 | Canola | cytosol | 19.86 | 23.4 |
| CDY27513 | Canola | cytosol | 46.57 | 22.28 |
| CDY52334 | Canola | cytosol, nucleus, vacuole | 31.77 | 19.95 |
| CDX80649 | Canola | cytosol | 30.32 | 19.44 |
| CDY06036 | Canola | cytosol | 29.6 | 18.98 |
| CDY65306 | Canola | cytosol | 22.02 | 18.83 |
| CDY01270 | Canola | extracellular, plasma membrane | 18.41 | 17.65 |
| CDX92764 | Canola | cytosol, nucleus, plasma membrane | 14.44 | 15.81 |
| CDX71951 | Canola | plastid | 29.96 | 15.66 |
| CDY30423 | Canola | extracellular, golgi | 12.27 | 15.6 |
| CDY65463 | Canola | cytosol, extracellular, nucleus | 8.66 | 14.81 |
| CDY41819 | Canola | cytosol | 2.17 | 8.45 |
| CDX71950 | Canola | cytosol | 2.53 | 5.26 |
Protein Annotations
| EnsemblPlants:CDY13667 | EnsemblPlantsGene:GSBRNA2T00078090001 | Gene3D:3.80.10.10 | InterPro:FBD | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt_2 | PANTHER:PTHR32212 | PANTHER:PTHR32212:SF234 | PFAM:PF07723 | PFAM:PF08387 | ProteinID:CDY13667 |
| ProteinID:CDY13667.1 | SEG:seg | SMART:SM00579 | SUPFAM:SSF52047 | UniParc:UPI0004EE7C44 | UniProt:A0A078FL04 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaA06g32560DBnaA06g32560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FL04]
Coordinates
chrLK032037:+:529263..530354
Molecular Weight (calculated)
31286.9 Da
IEP (calculated)
4.745
GRAVY (calculated)
0.031
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFGRGSTMD IGVLLGVAFG LHVRELELQV YSGGEPYRFP TSLYNCGTLE TLKLGPNVLV DVPFPVCLKA LTTLRLYKVI VKDERSVVNL LSGCSSLENL
101: EVITCTHSDV KTFTIAVPSL QRLTLITSID EYQLAYVINV PSLKYLYLRG LAEGDSCLIE NTPELLEANI IDMPVLDNSP NLQALKLITL WFRKGDWSPP
201: KYVAECLLNR LETFVWENYE GEIEDEREVA QYILRNASCL ETATFSRTDI HPEKRLERLK ELESVVRASN SCQLVFK
101: EVITCTHSDV KTFTIAVPSL QRLTLITSID EYQLAYVINV PSLKYLYLRG LAEGDSCLIE NTPELLEANI IDMPVLDNSP NLQALKLITL WFRKGDWSPP
201: KYVAECLLNR LETFVWENYE GEIEDEREVA QYILRNASCL ETATFSRTDI HPEKRLERLK ELESVVRASN SCQLVFK
001: MNFGCDPRIM DFEILIGIAF GRQLRKLVLK VYSGDWFKFP TSLYNSETLE TLELYHCILI DVPFPVCLKS LRTLNLHEVE FVNDESVVNL LAGCISLENL
101: VIHQTTDLNV KTFTIAVPSL QRLTVIVEYY EEFSVFVVNT PSLKYLKIEV QRLSLKVSLV EIFSLPPISN TFYHLTYLEL STYKPKWWNL LTLMLDTSPN
201: LQVLKIFDFM TSQEQRPWEK WNEPKNVPEC LLLHLETFVW TCYEGKLENE IELAKYILRN ARRLKKATFS IIEINPDKRV EMVGELKSVV RASNSCQLVF
301: I
101: VIHQTTDLNV KTFTIAVPSL QRLTVIVEYY EEFSVFVVNT PSLKYLKIEV QRLSLKVSLV EIFSLPPISN TFYHLTYLEL STYKPKWWNL LTLMLDTSPN
201: LQVLKIFDFM TSQEQRPWEK WNEPKNVPEC LLLHLETFVW TCYEGKLENE IELAKYILRN ARRLKKATFS IIEINPDKRV EMVGELKSVV RASNSCQLVF
301: I
Arabidopsis Description
FBD / Leucine Rich Repeat domains containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRV1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.