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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, peroxisome, plastid

Predictor Summary:
  • plastid 2
  • cytosol 1
  • extracellular 1
  • nucleus 1
  • mitochondrion 1
  • peroxisome 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra025236.1-P Field mustard cytosol 43.83 54.08
CDX83662 Canola cytosol, plastid 48.9 53.62
CDX83661 Canola cytosol, mitochondrion, nucleus 46.92 53.25
AT4G13965.1 Thale cress endoplasmic reticulum, peroxisome 49.56 53.19
CDY13667 Canola extracellular, plasma membrane 32.38 53.07
AT3G26920.3 Thale cress cytosol 39.65 52.94
AT3G26922.2 Thale cress cytosol 34.8 51.63
AT1G55030.2 Thale cress cytosol 46.26 48.61
AT3G52690.1 Thale cress extracellular, plasma membrane 31.94 48.49
AT3G49020.1 Thale cress cytosol, nucleus, plasma membrane 47.14 47.87
AT3G49030.1 Thale cress cytosol 46.04 47.18
AT2G04230.1 Thale cress cytosol 46.26 46.88
AT3G49040.1 Thale cress cytosol 31.94 46.62
AT3G52680.1 Thale cress cytosol 46.48 46.27
AT3G51530.1 Thale cress cytosol, endoplasmic reticulum, nucleus, plastid 45.37 45.27
AT4G00160.1 Thale cress cytosol 44.71 44.81
AT3G49045.1 Thale cress cytosol 11.45 44.07
AT4G26340.1 Thale cress cytosol 38.55 41.77
AT4G26350.1 Thale cress cytosol 33.04 34.8
AT3G55670.1 Thale cress cytosol 10.79 22.48
Protein Annotations
Gene3D:3.80.10.10MapMan:35.1EntrezGene:822309UniProt:A0A1I9LSS0ProteinID:AEE77243.1ProteinID:ANM65628.1
ArrayExpress:AT3G26930EnsemblPlantsGene:AT3G26930RefSeq:AT3G26930TAIR:AT3G26930RefSeq:AT3G26930-TAIR-GEnsemblPlants:AT3G26930.2
EMBL:AY924775Unigene:At.53514ProteinID:BAB01186.1InterPro:F-box-like_dom_sfInterPro:F-box_domInterPro:FBD
GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0008150InterPro:IPR001611InterPro:IPR001810
InterPro:IPR032675InterPro:LRR_dom_sfInterPro:Leu-rich_rptInterPro:Leu-rich_rpt_2RefSeq:NP_001327583.1RefSeq:NP_189328.2
PFAM:PF00646PFAM:PF07723PFAM:PF08387PFscan:PS50181PFscan:PS51450PANTHER:PTHR32212
PANTHER:PTHR32212:SF234SMART:SM00256SMART:SM00579SUPFAM:SSF52047SUPFAM:SSF81383UniParc:UPI0008493CB0
SEG:seg:::::
Description
Protein with RNI-like/FBD-like domain [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSS0]
Coordinates
chr3:+:9925555..9927393
Molecular Weight (calculated)
51899.8 Da
IEP (calculated)
5.502
GRAVY (calculated)
-0.038
Length
454 amino acids
Sequence
(BLAST)
001: MNRGGFSLYS KSCGQSLSNE DRISELPEAL LLQILSLLPT KKVVAMSVLS KRWRSLWKML PRLKFDDWMF PDNVNRCLLS HQASFLQSLH LVIDYDFVSH
101: MHTGILMGIA FGRHIRELVL YVNGFQESFT FPLSLCNCES LETLTLGHNV LIDVPSPVFL KSLRTLHLDG VEYTDDESVV NLLSGCISLE NLVVHRVIQA
201: DVTTFTIAVP SLKRLTLTTE FDDDEDSVYV INAPSLKYLK ILGDKAYLIE NSPELVEVSL TDRQVTVDGY PIASYVENLL RSLTSVKRMS LKISSYLEIK
301: FPTGSIFYQL VSLELYTNKA EWWNLLVLML DSSPKLQVLK LNGKLSGENN HLASMNWDQP KNIPGCLLFN LETFIWKGCK RIGEDEKEVA KYILRNTNRL
401: KRATFTREIY EENNSQDMFE NLEMVEELES VVRASKSCKL VFESTLWSLS NYDV
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.