Subcellular Localization
min:
: max
Winner_takes_all: extracellular, peroxisome, plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- extracellular 1
- nucleus 1
- mitochondrion 1
- peroxisome 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra025236.1-P | Field mustard | cytosol | 43.83 | 54.08 |
CDX83662 | Canola | cytosol, plastid | 48.9 | 53.62 |
CDX83661 | Canola | cytosol, mitochondrion, nucleus | 46.92 | 53.25 |
AT4G13965.1 | Thale cress | endoplasmic reticulum, peroxisome | 49.56 | 53.19 |
CDY13667 | Canola | extracellular, plasma membrane | 32.38 | 53.07 |
AT3G26920.3 | Thale cress | cytosol | 39.65 | 52.94 |
AT3G26922.2 | Thale cress | cytosol | 34.8 | 51.63 |
AT1G55030.2 | Thale cress | cytosol | 46.26 | 48.61 |
AT3G52690.1 | Thale cress | extracellular, plasma membrane | 31.94 | 48.49 |
AT3G49020.1 | Thale cress | cytosol, nucleus, plasma membrane | 47.14 | 47.87 |
AT3G49030.1 | Thale cress | cytosol | 46.04 | 47.18 |
AT2G04230.1 | Thale cress | cytosol | 46.26 | 46.88 |
AT3G49040.1 | Thale cress | cytosol | 31.94 | 46.62 |
AT3G52680.1 | Thale cress | cytosol | 46.48 | 46.27 |
AT3G51530.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus, plastid | 45.37 | 45.27 |
AT4G00160.1 | Thale cress | cytosol | 44.71 | 44.81 |
AT3G49045.1 | Thale cress | cytosol | 11.45 | 44.07 |
AT4G26340.1 | Thale cress | cytosol | 38.55 | 41.77 |
AT4G26350.1 | Thale cress | cytosol | 33.04 | 34.8 |
AT3G55670.1 | Thale cress | cytosol | 10.79 | 22.48 |
Protein Annotations
Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:822309 | UniProt:A0A1I9LSS0 | ProteinID:AEE77243.1 | ProteinID:ANM65628.1 |
ArrayExpress:AT3G26930 | EnsemblPlantsGene:AT3G26930 | RefSeq:AT3G26930 | TAIR:AT3G26930 | RefSeq:AT3G26930-TAIR-G | EnsemblPlants:AT3G26930.2 |
EMBL:AY924775 | Unigene:At.53514 | ProteinID:BAB01186.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD |
GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | InterPro:IPR001611 | InterPro:IPR001810 |
InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_2 | RefSeq:NP_001327583.1 | RefSeq:NP_189328.2 |
PFAM:PF00646 | PFAM:PF07723 | PFAM:PF08387 | PFscan:PS50181 | PFscan:PS51450 | PANTHER:PTHR32212 |
PANTHER:PTHR32212:SF234 | SMART:SM00256 | SMART:SM00579 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI0008493CB0 |
SEG:seg | : | : | : | : | : |
Description
Protein with RNI-like/FBD-like domain [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSS0]
Coordinates
chr3:+:9925555..9927393
Molecular Weight (calculated)
51899.8 Da
IEP (calculated)
5.502
GRAVY (calculated)
-0.038
Length
454 amino acids
Sequence
(BLAST)
(BLAST)
001: MNRGGFSLYS KSCGQSLSNE DRISELPEAL LLQILSLLPT KKVVAMSVLS KRWRSLWKML PRLKFDDWMF PDNVNRCLLS HQASFLQSLH LVIDYDFVSH
101: MHTGILMGIA FGRHIRELVL YVNGFQESFT FPLSLCNCES LETLTLGHNV LIDVPSPVFL KSLRTLHLDG VEYTDDESVV NLLSGCISLE NLVVHRVIQA
201: DVTTFTIAVP SLKRLTLTTE FDDDEDSVYV INAPSLKYLK ILGDKAYLIE NSPELVEVSL TDRQVTVDGY PIASYVENLL RSLTSVKRMS LKISSYLEIK
301: FPTGSIFYQL VSLELYTNKA EWWNLLVLML DSSPKLQVLK LNGKLSGENN HLASMNWDQP KNIPGCLLFN LETFIWKGCK RIGEDEKEVA KYILRNTNRL
401: KRATFTREIY EENNSQDMFE NLEMVEELES VVRASKSCKL VFESTLWSLS NYDV
101: MHTGILMGIA FGRHIRELVL YVNGFQESFT FPLSLCNCES LETLTLGHNV LIDVPSPVFL KSLRTLHLDG VEYTDDESVV NLLSGCISLE NLVVHRVIQA
201: DVTTFTIAVP SLKRLTLTTE FDDDEDSVYV INAPSLKYLK ILGDKAYLIE NSPELVEVSL TDRQVTVDGY PIASYVENLL RSLTSVKRMS LKISSYLEIK
301: FPTGSIFYQL VSLELYTNKA EWWNLLVLML DSSPKLQVLK LNGKLSGENN HLASMNWDQP KNIPGCLLFN LETFIWKGCK RIGEDEKEVA KYILRNTNRL
401: KRATFTREIY EENNSQDMFE NLEMVEELES VVRASKSCKL VFESTLWSLS NYDV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.