Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G49040.1 | Thale cress | cytosol | 50.0 | 49.2 |
| AT4G13965.1 | Thale cress | endoplasmic reticulum, peroxisome | 53.92 | 39.01 |
| AT3G49030.1 | Thale cress | cytosol | 53.27 | 36.79 |
| AT3G49020.1 | Thale cress | cytosol, nucleus, plasma membrane | 52.61 | 36.02 |
| AT3G52680.1 | Thale cress | cytosol | 53.59 | 35.96 |
| AT1G55030.2 | Thale cress | cytosol | 49.35 | 34.95 |
| AT3G26930.2 | Thale cress | extracellular, peroxisome, plastid | 51.63 | 34.8 |
| AT2G04230.1 | Thale cress | cytosol | 50.65 | 34.6 |
| AT4G00160.1 | Thale cress | cytosol | 50.0 | 33.77 |
| CDX89785 | Canola | cytosol, extracellular, nucleus | 37.58 | 33.05 |
| Bra015355.1-P | Field mustard | cytosol, extracellular, nucleus | 37.58 | 33.05 |
| AT3G51530.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus, plastid | 48.69 | 32.75 |
| AT4G26340.1 | Thale cress | cytosol | 44.77 | 32.7 |
| AT3G26920.3 | Thale cress | cytosol | 34.64 | 31.18 |
| AT3G52690.1 | Thale cress | extracellular, plasma membrane | 30.07 | 30.77 |
| CDY65918 | Canola | cytosol | 42.48 | 30.37 |
| AT4G26350.1 | Thale cress | cytosol | 38.56 | 27.38 |
| CDX88297 | Canola | cytosol | 16.01 | 20.85 |
| AT3G55670.1 | Thale cress | cytosol | 9.15 | 12.84 |
| CDY00182 | Canola | cytosol | 0.65 | 2.47 |
| AT3G49045.1 | Thale cress | cytosol | 0.65 | 1.69 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:7922367 | ProteinID:AEE77242.1 | ProteinID:ANM64272.1 | ArrayExpress:AT3G26922 |
| EnsemblPlantsGene:AT3G26922 | RefSeq:AT3G26922 | TAIR:AT3G26922 | RefSeq:AT3G26922-TAIR-G | EnsemblPlants:AT3G26922.2 | ProteinID:BAB01185.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 |
| InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 | RefSeq:NP_001154649.1 | RefSeq:NP_001326312.1 |
| PFAM:PF00646 | PFAM:PF07723 | PFscan:PS50181 | PANTHER:PTHR32212 | PANTHER:PTHR32212:SF234 | UniProt:Q9LJF8 |
| SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI0000F536EA | : | : | : |
Description
F-box/LRR-repeat protein At3g26922 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJF8]
Coordinates
chr3:+:9922719..9924725
Molecular Weight (calculated)
34625.0 Da
IEP (calculated)
5.083
GRAVY (calculated)
0.043
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRCLRNGNG VNEDRISDLP EALLLQILSM LPVKDVVTTS VLSKPWRSLW KLVPTLKFDY ENNQSEDETY SEIVCRLLLS NKAPFLESLH LGFRFGECRS
101: VEVGMWIGIA YARHVRDLVL HVESVKGSFI FPTGLYNCET LESLTLRSWV LVDVPSPACL KSLRTLRLEN VDYKYDDSVY NLLSGCPNLE NLVVYRGNLL
201: EVETFTIAVP SLQRLTIYDD NDGEYCTGYV INAPSLKYLK IDGFKALESC LIENAPELVE ATIMNVSKII NEKLLETLTS VKRLSLALSP LELKFSCNNY
301: SGHLLL
101: VEVGMWIGIA YARHVRDLVL HVESVKGSFI FPTGLYNCET LESLTLRSWV LVDVPSPACL KSLRTLRLEN VDYKYDDSVY NLLSGCPNLE NLVVYRGNLL
201: EVETFTIAVP SLQRLTIYDD NDGEYCTGYV INAPSLKYLK IDGFKALESC LIENAPELVE ATIMNVSKII NEKLLETLTS VKRLSLALSP LELKFSCNNY
301: SGHLLL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.