Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48198 | Canola | cytosol | 17.38 | 66.96 |
| Bra034324.1-P | Field mustard | cytosol | 17.16 | 66.09 |
| AT3G49045.1 | Thale cress | cytosol | 17.38 | 65.25 |
| AT2G04230.1 | Thale cress | cytosol | 63.88 | 63.17 |
| AT3G49020.1 | Thale cress | cytosol, nucleus, plasma membrane | 61.85 | 61.3 |
| CDY69654 | Canola | cytosol | 42.89 | 59.19 |
| CDY69799 | Canola | cytosol | 48.31 | 55.73 |
| CDY48199 | Canola | extracellular, plasma membrane, vacuole | 57.79 | 53.44 |
| AT3G26922.2 | Thale cress | cytosol | 36.79 | 53.27 |
| AT3G52690.1 | Thale cress | extracellular, plasma membrane | 35.44 | 52.51 |
| AT4G13965.1 | Thale cress | endoplasmic reticulum, peroxisome | 50.11 | 52.48 |
| AT3G49040.1 | Thale cress | cytosol | 36.79 | 52.41 |
| AT3G52680.1 | Thale cress | cytosol | 52.14 | 50.66 |
| AT4G00160.1 | Thale cress | cytosol | 50.56 | 49.45 |
| AT3G51530.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus, plastid | 49.66 | 48.35 |
| AT3G26920.3 | Thale cress | cytosol | 37.02 | 48.24 |
| CDY00432 | Canola | cytosol | 26.64 | 47.2 |
| AT3G26930.2 | Thale cress | extracellular, peroxisome, plastid | 47.18 | 46.04 |
| AT4G26340.1 | Thale cress | cytosol | 41.31 | 43.68 |
| AT1G55030.2 | Thale cress | cytosol | 42.21 | 43.29 |
| AT4G26350.1 | Thale cress | cytosol | 35.67 | 36.66 |
| AT3G55670.1 | Thale cress | cytosol | 14.0 | 28.44 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:824064 | ProteinID:AEE78488.1 | ArrayExpress:AT3G49030 | EnsemblPlantsGene:AT3G49030 |
| RefSeq:AT3G49030 | TAIR:AT3G49030 | RefSeq:AT3G49030-TAIR-G | EnsemblPlants:AT3G49030.1 | TAIR:AT3G49030.1 | Unigene:At.53845 |
| ProteinID:CAB62007.1 | ncoils:Coil | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt_2 | RefSeq:NP_190472.1 | PFAM:PF00646 | PFAM:PF07723 | PFAM:PF08387 | PFscan:PS50181 |
| PANTHER:PTHR32212 | PANTHER:PTHR32212:SF234 | UniProt:Q9SMU0 | SMART:SM00256 | SMART:SM00579 | SUPFAM:SSF52058 |
| SUPFAM:SSF81383 | UniParc:UPI00000A4533 | : | : | : | : |
Description
Putative F-box/FBD/LRR-repeat protein At3g49030 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMU0]
Coordinates
chr3:+:18173138..18174769
Molecular Weight (calculated)
50822.4 Da
IEP (calculated)
5.534
GRAVY (calculated)
-0.100
Length
443 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQQLKTDGL NLSIRDAVKE DRISELPEDL LLQILSDIPT ENVIATSVLS KRWRSLWKMV PNLTFDFTFD PKYHQTFSEN LYRSLTSHEA SVLESLQLNF
101: TRGIDGLNIG MWIATAYVRH VRKLVLVSFG DVRDKRARFR SALFNFNDTL DILEIQDYIL LDLPSPVCLK SLRELRLYEV HFKDEASVCN LLCGCPSLEV
201: LSVHRERNVD VETFTIVVPS LQRLTIYDFC IGGGKGGYVI NAPSLKYLNI VGFEGLDFCL IENAPELVEA EISDVSHIAN ENILESLTSV KRLSLESPIK
301: IKFPTGKVFD QLVYLDVLTK EREWWNLLSR MLESSPKLQI LKLTGLSCIE KGLDGQNWNP PKCVPECLLF HLEKFLWTGY EWQRGDEKEV ATYILENARL
401: LKKATFSTKR IDLENLEKRR EMLNELASVA RASDSCHLVF HSI
101: TRGIDGLNIG MWIATAYVRH VRKLVLVSFG DVRDKRARFR SALFNFNDTL DILEIQDYIL LDLPSPVCLK SLRELRLYEV HFKDEASVCN LLCGCPSLEV
201: LSVHRERNVD VETFTIVVPS LQRLTIYDFC IGGGKGGYVI NAPSLKYLNI VGFEGLDFCL IENAPELVEA EISDVSHIAN ENILESLTSV KRLSLESPIK
301: IKFPTGKVFD QLVYLDVLTK EREWWNLLSR MLESSPKLQI LKLTGLSCIE KGLDGQNWNP PKCVPECLLF HLEKFLWTGY EWQRGDEKEV ATYILENARL
401: LKKATFSTKR IDLENLEKRR EMLNELASVA RASDSCHLVF HSI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.