Factsheet for AT4G26340.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89345	Canola	cytosol, peroxisome, plastid	65.16	65.62
CDX94344	Canola	cytosol, peroxisome, plastid	65.16	65.16
Bra026446.1-P	Field mustard	cytosol	63.48	63.79
CDX92766	Canola	cytosol	29.83	60.1
CDY42742	Canola	cytosol	59.43	59.14
CDX92699	Canola	cytosol	43.91	58.79
Bra019111.1-P	Field mustard	cytosol	52.74	58.78
AT4G26350.1	Thale cress	cytosol	50.84	49.42
CDY65463	Canola	cytosol, extracellular, nucleus	18.38	47.53
AT3G26922.2	Thale cress	cytosol	32.7	44.77
AT3G52690.1	Thale cress	extracellular, plasma membrane	29.59	41.47
AT3G49030.1	Thale cress	cytosol	43.68	41.31
AT4G13965.1	Thale cress	endoplasmic reticulum, peroxisome	41.05	40.66
AT4G00160.1	Thale cress	cytosol	43.44	40.18
AT3G49020.1	Thale cress	cytosol, nucleus, plasma membrane	42.48	39.82
AT3G52680.1	Thale cress	cytosol	42.72	39.25
AT3G26920.3	Thale cress	cytosol	31.74	39.12
AT1G55030.2	Thale cress	cytosol	39.86	38.66
AT2G04230.1	Thale cress	cytosol	41.29	38.62
AT3G26930.2	Thale cress	extracellular, peroxisome, plastid	41.77	38.55
AT3G49045.1	Thale cress	cytosol	10.74	38.14
AT3G49040.1	Thale cress	cytosol	28.16	37.94
AT3G51530.1	Thale cress	cytosol, endoplasmic reticulum, nucleus, plastid	39.14	36.04
CDX92764	Canola	cytosol, nucleus, plasma membrane	18.85	31.23
AT3G55670.1	Thale cress	cytosol	11.22	21.56

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EntrezGene:828740	UniProt:A0A178V5F0	ProteinID:AEE85187.1	ArrayExpress:AT4G26340
EnsemblPlantsGene:AT4G26340	RefSeq:AT4G26340	TAIR:AT4G26340	RefSeq:AT4G26340-TAIR-G	EnsemblPlants:AT4G26340.1	TAIR:AT4G26340.1
EMBL:AY142504	Unigene:At.32188	ProteinID:CAB38963.1	ProteinID:CAB79489.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	InterPro:IPR001810
InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	RefSeq:NP_194364.2	ProteinID:OAP00293.1	PFAM:PF00646
PFAM:PF07723	PFAM:PF08387	PANTHER:PTHR32212	PANTHER:PTHR32212:SF234	UniProt:Q8H1R7	SMART:SM00256
SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI00000ADA3A	SEG:seg	:

Description

F-box/FBD/LRR-repeat protein At4g26340 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1R7]

Coordinates

chr4:+:13324130..13325590

Molecular Weight (calculated)

47303.1 Da

IEP (calculated)

5.278

GRAVY (calculated)

0.006

Length

419 amino acids

Sequence
(BLAST)

001: MDRISQLSDD LLLQILSFIP GKDVVATSLL SKRWQSLWML VSELEYDDSY HTGDYKSFSQ FVYRSLLSNN APVIKHLHLN LGPDCPAIDI GLWIGFALTR
101: RLRQLKINIR TSSNDASFSL PSSLYTSDTL ETLRLINFVL LDVPSSVCLP SLKVLHLKTV DYEDDASLPS LLFGCPNLEE LFVERHDQDL EMDVTFVVPS
201: LRRLSMIDKN YGQCDRYVID VPSLKYLNIT DDAVYDVRQI ENMPELVEAH VDITQGVTHK FLRALTSVRQ LSLCLSLSEV MCPSGIIFSQ LVHLNLSTVV
301: KGWWDLLTSM LQDSPKLQSL KLIDKQHESG LCGIETPIGW KLPSSVPECL LFSLEAFEWI GYKGRRGDRE VATYVLKNAA CLRTAKFSPE STDVGEKYHM
401: LKELASVPTA STSSKLLFD

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.