Skip to main content
crop-pal logo
Thale cress
Search for another protein from :
Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, extracellular

Predictor Summary:
  • nucleus 1
  • plastid 1
  • extracellular 4
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 4
  • golgi 3
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, plasma membrane
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT3G49045.1 Thale cress cytosol 18.06 45.76
CDX87122 Canola cytosol 57.19 45.24
AT3G26920.3 Thale cress cytosol 49.5 43.53
AT3G52680.1 Thale cress cytosol 58.53 38.38
AT3G51530.1 Thale cress cytosol, endoplasmic reticulum, nucleus, plastid 57.86 38.02
AT4G00160.1 Thale cress cytosol 55.85 36.87
AT4G13965.1 Thale cress endoplasmic reticulum, peroxisome 51.51 36.41
AT3G49020.1 Thale cress cytosol, nucleus, plasma membrane 53.85 36.02
AT3G49030.1 Thale cress cytosol 52.51 35.44
AT2G04230.1 Thale cress cytosol 52.17 34.82
AT3G26930.2 Thale cress extracellular, peroxisome, plastid 48.49 31.94
AT1G55030.2 Thale cress cytosol 45.15 31.25
AT3G26922.2 Thale cress cytosol 30.77 30.07
AT4G26340.1 Thale cress cytosol 41.47 29.59
AT3G49040.1 Thale cress cytosol 27.76 26.69
AT3G55670.1 Thale cress cytosol 19.06 26.15
AT4G26350.1 Thale cress cytosol 35.79 24.83
Protein Annotations
Gene3D:3.80.10.10MapMan:35.1EntrezGene:824435ProteinID:AEE78981.1ArrayExpress:AT3G52690EnsemblPlantsGene:AT3G52690
RefSeq:AT3G52690TAIR:AT3G52690RefSeq:AT3G52690-TAIR-GEnsemblPlants:AT3G52690.1TAIR:AT3G52690.1Unigene:At.53906
UniProt:F4J826InterPro:FBDInterPro:IPR032675InterPro:LRR_dom_sfInterPro:Leu-rich_rpt_2RefSeq:NP_190837.1
PFAM:PF07723PFAM:PF08387PANTHER:PTHR32212PANTHER:PTHR32212:SF234SMART:SM00579SUPFAM:SSF52058
UniParc:UPI0000163707SEG:seg::::
Description
RNI-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J826]
Coordinates
chr3:+:19530736..19531811
Molecular Weight (calculated)
34476.7 Da
IEP (calculated)
8.522
GRAVY (calculated)
0.043
Length
299 amino acids
Sequence
(BLAST)
001: MFSTLETLIL KYLALVDVPS PVCMKSLRTL HLDCVNFKHN ESFSNLISGC PNLEDLFMYQ YYPLDVVMNF IIVAPSLKRL VIIDYREAGG YVINAPTLKY
101: LKIKGLSHCG FCLIENAPVL VEAKIRNLFY IYKEKILGSL KSAKRLSLDL SPLECPIDSI FYQLVHLEIY TCKEEWWNLL KLMLDSSPKL QVLKLIGKNL
201: DFKKVGMVGG KWNEPKNVPE CLLSQLKMFV WTSYHWESEV EKEVATYILK NARQLKNVSF STRPIHSKEH NKLEEKCKML KELDGVVRAS SSCHLVFIE
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.