Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- endoplasmic reticulum 1
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93829 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 56.7 | 61.58 |
| Bra023272.1-P | Field mustard | cytosol | 48.13 | 58.87 |
| CDY01270 | Canola | extracellular, plasma membrane | 37.36 | 58.82 |
| AT3G52690.1 | Thale cress | extracellular, plasma membrane | 38.02 | 57.86 |
| AT3G52680.1 | Thale cress | cytosol | 53.63 | 53.51 |
| AT3G49045.1 | Thale cress | cytosol | 13.41 | 51.69 |
| AT4G00160.1 | Thale cress | cytosol | 51.21 | 51.43 |
| AT3G49020.1 | Thale cress | cytosol, nucleus, plasma membrane | 49.45 | 50.34 |
| AT2G04230.1 | Thale cress | cytosol | 49.23 | 50.0 |
| AT3G49030.1 | Thale cress | cytosol | 48.35 | 49.66 |
| AT3G26922.2 | Thale cress | cytosol | 32.75 | 48.69 |
| AT4G13965.1 | Thale cress | endoplasmic reticulum, peroxisome | 43.96 | 47.28 |
| AT1G55030.2 | Thale cress | cytosol | 44.4 | 46.76 |
| AT3G49040.1 | Thale cress | cytosol | 31.65 | 46.3 |
| AT3G26930.2 | Thale cress | extracellular, peroxisome, plastid | 45.27 | 45.37 |
| AT3G26920.3 | Thale cress | cytosol | 33.85 | 45.29 |
| AT4G26340.1 | Thale cress | cytosol | 36.04 | 39.14 |
| AT4G26350.1 | Thale cress | cytosol | 32.53 | 34.34 |
| AT3G55670.1 | Thale cress | cytosol | 15.16 | 31.65 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:824316 | ProteinID:AEE78803.1 | EMBL:AK229740 | ArrayExpress:AT3G51530 |
| EnsemblPlantsGene:AT3G51530 | RefSeq:AT3G51530 | TAIR:AT3G51530 | RefSeq:AT3G51530-TAIR-G | EnsemblPlants:AT3G51530.1 | TAIR:AT3G51530.1 |
| Unigene:At.69872 | EMBL:BT022018 | EMBL:BT029216 | ProteinID:CAB63017.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | InterPro:IPR032675 |
| InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 | RefSeq:NP_190721.3 | PFAM:PF00646 | PFAM:PF07723 | PFAM:PF08387 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | PFscan:PS50181 |
| PANTHER:PTHR32212 | PANTHER:PTHR32212:SF234 | UniProt:Q501E9 | SMART:SM00579 | SUPFAM:SSF52047 | SUPFAM:SSF81383 |
| UniParc:UPI000034EFE7 | SEG:seg | : | : | : | : |
Description
F-box/FBD/LRR-repeat protein At3g51530 [Source:UniProtKB/Swiss-Prot;Acc:Q501E9]
Coordinates
chr3:-:19112694..19114643
Molecular Weight (calculated)
52754.0 Da
IEP (calculated)
8.753
GRAVY (calculated)
-0.231
Length
455 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNSERFSAA KPLMEQGGKS SRKPGFMSED RISELPEVLL LQILSSLPTK LVISTSVLSK RWLSLWKMVQ RLEFESSRNI YDFAENVTRS LLSHKAPVLE
101: SLHLKVGDQF DGVYVGVWAT IAFTRHVREF VLDLSSYHGP RVRFPTSLFC FDTLETLKLD YVYIYVPCPV SMKSLRTLHL LSVVYKGDES GHNLFASCPN
201: LEHLVLRRGF FFDAVVNFII DAPSLKTLLL SDPFSARESS RGYVIKAPSL KYLGIESVEG FEYFLIENVT ELVEANIRNV SKIVNENILG SLKSAKRLSL
301: DLSPLKITYP TEVMYHQLVY LEMHTHKVEW WNLLTHMLDS SPKLQVLKLI DRETRHENLE FDKKYKDQGK WNQPKYVPEC LETFMWRNCN WGREEEKEVA
401: TYILRNARQL KKATFSTDPI EAKRLCKLAK RRKMREELDG VVMTSNSCHL VFEFE
101: SLHLKVGDQF DGVYVGVWAT IAFTRHVREF VLDLSSYHGP RVRFPTSLFC FDTLETLKLD YVYIYVPCPV SMKSLRTLHL LSVVYKGDES GHNLFASCPN
201: LEHLVLRRGF FFDAVVNFII DAPSLKTLLL SDPFSARESS RGYVIKAPSL KYLGIESVEG FEYFLIENVT ELVEANIRNV SKIVNENILG SLKSAKRLSL
301: DLSPLKITYP TEVMYHQLVY LEMHTHKVEW WNLLTHMLDS SPKLQVLKLI DRETRHENLE FDKKYKDQGK WNQPKYVPEC LETFMWRNCN WGREEEKEVA
401: TYILRNARQL KKATFSTDPI EAKRLCKLAK RRKMREELDG VVMTSNSCHL VFEFE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.