CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, golgi, plastid

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
mitochondrion 2
plastid 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023272.1-P	Field mustard	cytosol	82.82	93.28
CDY01270	Canola	extracellular, plasma membrane	50.12	72.66
CDY48198	Canola	cytosol	15.75	57.39
AT3G51530.1	Thale cress	cytosol, endoplasmic reticulum, nucleus, plastid	61.58	56.7
CDY69654	Canola	cytosol	39.14	51.09
CDY00182	Canola	cytosol	9.79	50.62
CDX87122	Canola	cytosol	44.15	48.94
CDX73615	Canola	cytosol	42.48	47.59
CDY37900	Canola	cytosol, extracellular, nucleus	14.56	47.29
CDX76220	Canola	endoplasmic reticulum, extracellular	16.95	47.02
CDY13667	Canola	extracellular, plasma membrane	30.31	45.85
CDY48199	Canola	extracellular, plasma membrane, vacuole	52.27	45.72
CDY00432	Canola	cytosol	27.21	45.6
CDX88297	Canola	cytosol	25.54	45.53
CDY48007	Canola	plastid	47.49	45.43
CDX78112	Canola	cytosol	46.3	45.33
CDY48010	Canola	cytosol	48.45	45.21
CDX89785	Canola	cytosol, extracellular, nucleus	37.23	44.83
CDY69799	Canola	cytosol	40.33	44.01
CDY00181	Canola	plasma membrane, plastid, vacuole	44.15	43.43
CDX83662	Canola	cytosol, plastid	42.0	42.51
CDX83661	Canola	cytosol, mitochondrion, nucleus	40.57	42.5
CDY63198	Canola	mitochondrion, plasma membrane	45.35	41.48
CDY72188	Canola	cytosol	42.24	41.26
CDY23230	Canola	cytosol	42.24	41.26
CDY23229	Canola	cytosol	42.24	41.26
CDX89356	Canola	cytosol, extracellular, mitochondrion, plastid	34.84	40.11
CDX95363	Canola	cytosol	40.1	40.1
CDX94363	Canola	cytosol	33.17	38.19
CDY37901	Canola	cytosol	21.96	37.55
CDY65918	Canola	cytosol	37.23	36.45
CDY27513	Canola	cytosol	50.12	36.27
CDX89345	Canola	cytosol, peroxisome, plastid	34.13	34.38
CDX94344	Canola	cytosol, peroxisome, plastid	34.37	34.37
CDX92699	Canola	cytosol	25.54	34.19
CDX92766	Canola	cytosol	16.71	33.65
CDY42742	Canola	cytosol	33.65	33.49
CDY65306	Canola	cytosol	25.3	32.72
CDY65463	Canola	cytosol, extracellular, nucleus	12.17	31.48
CDY52334	Canola	cytosol, nucleus, vacuole	31.03	29.48
CDX80649	Canola	cytosol	29.83	28.94
CDY06036	Canola	cytosol	29.59	28.7
CDX71950	Canola	cytosol	7.4	23.31
CDY30423	Canola	extracellular, golgi	11.46	22.02
CDX71951	Canola	plastid	26.97	21.32
CDX92764	Canola	cytosol, nucleus, plasma membrane	12.17	20.16
CDY41819	Canola	cytosol	1.43	8.45

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlants:CDX93829	ProteinID:CDX93829	ProteinID:CDX93829.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00156611001
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PFAM:PF00646	PFAM:PF07723
PFAM:PF08387	PFscan:PS50181	PANTHER:PTHR32212	PANTHER:PTHR32212:SF234	SMART:SM00579	SUPFAM:SSF52058
SUPFAM:SSF81383	UniParc:UPI0004EDC27D	:	:	:	:

Description

BnaA09g24290D

Coordinates

chrLK031877:-:1310175..1311965

Molecular Weight (calculated)

47956.9 Da

IEP (calculated)

8.975

GRAVY (calculated)

-0.080

Length

419 amino acids

Sequence
(BLAST)

001: MEPCLRKRYV VREDRISSLP EPLILQILSL LPTKLVIATS VLSKRWRSVW KKVPILRFES KGNIQKFAEN DVYIGIWAGI AVTRHVRELE LDLGYLCGNP
101: VRFPSCLLCF DTLETLKLKH YILLDIPSMV SLKSLRTLHL HSVVYKDSES VRNLFASCLN LEHLVVQRGF HYNDGVRFVI ESPSLKTLLV SGGETYGKQN
201: GGYVINVPSL QHLTIQMLKG YEYCLIENAP ELVDANIINV SHTTNETIMG SLKSAKRLSL DLSPLQIAYP TGMVFHQLVS LEMYTHKVAW WNLLALMLDS
301: SPKLQVLKLI DRSSHQPKLV SDKKDMPPGK WNQPENVPEC LSSHLETFVW TRPDWIREEE KEVARYILSN AQQLKKATFI IDPIEPKRLF RLAKRREMLN
401: ELPAVIMASK SCNLVVESE

Best Arabidopsis Sequence Match ( AT3G51530.1 )
(BLAST)

001: MKNSERFSAA KPLMEQGGKS SRKPGFMSED RISELPEVLL LQILSSLPTK LVISTSVLSK RWLSLWKMVQ RLEFESSRNI YDFAENVTRS LLSHKAPVLE
101: SLHLKVGDQF DGVYVGVWAT IAFTRHVREF VLDLSSYHGP RVRFPTSLFC FDTLETLKLD YVYIYVPCPV SMKSLRTLHL LSVVYKGDES GHNLFASCPN
201: LEHLVLRRGF FFDAVVNFII DAPSLKTLLL SDPFSARESS RGYVIKAPSL KYLGIESVEG FEYFLIENVT ELVEANIRNV SKIVNENILG SLKSAKRLSL
301: DLSPLKITYP TEVMYHQLVY LEMHTHKVEW WNLLTHMLDS SPKLQVLKLI DRETRHENLE FDKKYKDQGK WNQPKYVPEC LETFMWRNCN WGREEEKEVA
401: TYILRNARQL KKATFSTDPI EAKRLCKLAK RRKMREELDG VVMTSNSCHL VFEFE

Arabidopsis Description

F-box/FBD/LRR-repeat protein At3g51530 [Source:UniProtKB/Swiss-Prot;Acc:Q501E9]
SUBAcon: [endoplasmic reticulum,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.