Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00182 | Canola | cytosol | 17.02 | 49.38 |
| CDY65918 | Canola | cytosol | 83.83 | 46.03 |
| CDY48198 | Canola | cytosol | 19.15 | 39.13 |
| CDY37900 | Canola | cytosol, extracellular, nucleus | 20.0 | 36.43 |
| CDX89785 | Canola | cytosol, extracellular, nucleus | 46.38 | 31.32 |
| CDX76220 | Canola | endoplasmic reticulum, extracellular | 19.57 | 30.46 |
| CDY69654 | Canola | cytosol | 37.45 | 27.41 |
| CDX92766 | Canola | cytosol | 23.83 | 26.92 |
| CDX93829 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 45.53 | 25.54 |
| CDY00181 | Canola | plasma membrane, plastid, vacuole | 45.53 | 25.12 |
| CDY00432 | Canola | cytosol | 25.96 | 24.4 |
| CDX83662 | Canola | cytosol, plastid | 42.98 | 24.4 |
| CDY01270 | Canola | extracellular, plasma membrane | 29.36 | 23.88 |
| CDY63198 | Canola | mitochondrion, plasma membrane | 46.38 | 23.8 |
| CDY48010 | Canola | cytosol | 43.4 | 22.72 |
| CDX87122 | Canola | cytosol | 35.74 | 22.22 |
| CDY65463 | Canola | cytosol, extracellular, nucleus | 15.32 | 22.22 |
| CDX73615 | Canola | cytosol | 35.32 | 22.19 |
| CDX78112 | Canola | cytosol | 39.57 | 21.73 |
| CDY23230 | Canola | cytosol | 39.57 | 21.68 |
| CDY23229 | Canola | cytosol | 39.57 | 21.68 |
| CDY72188 | Canola | cytosol | 39.57 | 21.68 |
| CDY48199 | Canola | extracellular, plasma membrane, vacuole | 43.83 | 21.5 |
| CDX83661 | Canola | cytosol, mitochondrion, nucleus | 36.6 | 21.5 |
| CDY48007 | Canola | plastid | 37.87 | 20.32 |
| CDX95363 | Canola | cytosol | 36.17 | 20.29 |
| CDY69799 | Canola | cytosol | 32.77 | 20.05 |
| CDY13667 | Canola | extracellular, plasma membrane | 23.4 | 19.86 |
| CDX89356 | Canola | cytosol, extracellular, mitochondrion, plastid | 29.79 | 19.23 |
| CDX89345 | Canola | cytosol, peroxisome, plastid | 33.62 | 18.99 |
| CDX94363 | Canola | cytosol | 28.51 | 18.41 |
| CDX94344 | Canola | cytosol, peroxisome, plastid | 32.34 | 18.14 |
| CDY42742 | Canola | cytosol | 31.49 | 17.58 |
| CDY27513 | Canola | cytosol | 42.13 | 17.1 |
| CDY52334 | Canola | cytosol, nucleus, vacuole | 30.21 | 16.1 |
| AT3G26922.2 | Thale cress | cytosol | 20.85 | 16.01 |
| CDY06036 | Canola | cytosol | 28.94 | 15.74 |
| CDX80649 | Canola | cytosol | 27.66 | 15.05 |
| CDY65306 | Canola | cytosol | 20.43 | 14.81 |
| CDX92699 | Canola | cytosol | 18.3 | 13.74 |
| CDX71951 | Canola | plastid | 25.96 | 11.51 |
| CDX71950 | Canola | cytosol | 6.38 | 11.28 |
| CDY30423 | Canola | extracellular, golgi | 7.23 | 7.8 |
| CDX92764 | Canola | cytosol, nucleus, plasma membrane | 7.66 | 7.11 |
| CDY37901 | Canola | cytosol | 5.53 | 5.31 |
| CDY41819 | Canola | cytosol | 1.28 | 4.23 |
Protein Annotations
| EnsemblPlants:CDX88297 | EnsemblPlantsGene:GSBRNA2T00147799001 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:FBD | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| PANTHER:PTHR32212 | PANTHER:PTHR32212:SF234 | PFAM:PF08387 | PFscan:PS50181 | ProteinID:CDX88297 | ProteinID:CDX88297.1 |
| SEG:seg | SMART:SM00579 | SUPFAM:SSF81383 | UniParc:UPI0004EE1D1A | MapMan:35.1 | : |
Description
BnaC06g37410D
Coordinates
chrLK031855:-:203175..203882
Molecular Weight (calculated)
27466.7 Da
IEP (calculated)
9.297
GRAVY (calculated)
-0.212
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MQNDLSKRCW RDDEGVDRIS KLPQARIFQI LSLLPQRDVV TTSVLSKRWN APCLKYLMIK GIRDIQFRLV EMIANNTSDE DLLRIRIVSL SSRSSLISEI
101: AFPKYTIFHQ LVYLELYTSQ AIWCNLLTLI INTSPRLQVL KLIGCEWDYR KVCSGRWNQP KNVPECLETF VWNCCKEEQE KEKGVANYIL RNANRLKKAK
201: IIMKEFNAQE RLKMLEEFKS VVKASNSSCN ILVVE
101: AFPKYTIFHQ LVYLELYTSQ AIWCNLLTLI INTSPRLQVL KLIGCEWDYR KVCSGRWNQP KNVPECLETF VWNCCKEEQE KEKGVANYIL RNANRLKKAK
201: IIMKEFNAQE RLKMLEEFKS VVKASNSSCN ILVVE
001: MFSTLETLIL KYLALVDVPS PVCMKSLRTL HLDCVNFKHN ESFSNLISGC PNLEDLFMYQ YYPLDVVMNF IIVAPSLKRL VIIDYREAGG YVINAPTLKY
101: LKIKGLSHCG FCLIENAPVL VEAKIRNLFY IYKEKILGSL KSAKRLSLDL SPLECPIDSI FYQLVHLEIY TCKEEWWNLL KLMLDSSPKL QVLKLIGKNL
201: DFKKVGMVGG KWNEPKNVPE CLLSQLKMFV WTSYHWESEV EKEVATYILK NARQLKNVSF STRPIHSKEH NKLEEKCKML KELDGVVRAS SSCHLVFIE
101: LKIKGLSHCG FCLIENAPVL VEAKIRNLFY IYKEKILGSL KSAKRLSLDL SPLECPIDSI FYQLVHLEIY TCKEEWWNLL KLMLDSSPKL QVLKLIGKNL
201: DFKKVGMVGG KWNEPKNVPE CLLSQLKMFV WTSYHWESEV EKEVATYILK NARQLKNVSF STRPIHSKEH NKLEEKCKML KELDGVVRAS SSCHLVFIE
Arabidopsis Description
RNI-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J826]
SUBAcon: [plasma membrane,extracellular]
SUBAcon: [plasma membrane,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.