CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78112	Canola	cytosol	92.51	80.84
Bra006939.1-P	Field mustard	cytosol	59.09	66.97
CDY48198	Canola	cytosol	17.11	55.65
CDX76220	Canola	endoplasmic reticulum, extracellular	22.19	54.97
CDY23229	Canola	cytosol	61.5	53.61
CDY72188	Canola	cytosol	60.43	52.68
CDY23230	Canola	cytosol	60.16	52.45
CDX95363	Canola	cytosol	56.95	50.84
AT4G00160.1	Thale cress	cytosol	60.96	50.33
AT3G52680.1	Thale cress	cytosol	60.16	49.34
CDY00182	Canola	cytosol	9.63	44.44
CDY37900	Canola	cytosol, extracellular, nucleus	14.97	43.41
CDX93829	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	47.59	42.48
CDY00432	Canola	cytosol	27.81	41.6
CDX87122	Canola	cytosol	41.98	41.53
CDY48007	Canola	plastid	47.59	40.64
CDY69654	Canola	cytosol	34.49	40.19
CDY00181	Canola	plasma membrane, plastid, vacuole	45.72	40.14
CDY48010	Canola	cytosol	47.59	39.64
CDX83661	Canola	cytosol, mitochondrion, nucleus	41.98	39.25
CDX89785	Canola	cytosol, extracellular, nucleus	36.36	39.08
CDY69799	Canola	cytosol	39.3	38.28
CDY48199	Canola	extracellular, plasma membrane, vacuole	48.93	38.2
CDY01270	Canola	extracellular, plasma membrane	29.41	38.06
CDX92699	Canola	cytosol	31.82	38.02
CDX83662	Canola	cytosol, plastid	41.44	37.44
CDY63198	Canola	mitochondrion, plasma membrane	45.72	37.34
CDX94344	Canola	cytosol, peroxisome, plastid	41.44	36.99
CDY13667	Canola	extracellular, plasma membrane	27.01	36.46
CDX71950	Canola	cytosol	12.83	36.09
CDX89345	Canola	cytosol, peroxisome, plastid	39.84	35.82
CDY42742	Canola	cytosol	39.84	35.39
CDX88297	Canola	cytosol	22.19	35.32
CDX89356	Canola	cytosol, extracellular, mitochondrion, plastid	32.62	33.52
CDY65306	Canola	cytosol	28.88	33.33
CDY65918	Canola	cytosol	37.97	33.18
CDY37901	Canola	cytosol	21.66	33.06
CDX92766	Canola	cytosol	18.18	32.69
CDX94363	Canola	cytosol	31.55	32.42
CDY27513	Canola	cytosol	49.73	32.12
CDY65463	Canola	cytosol, extracellular, nucleus	13.9	32.1
CDY52334	Canola	cytosol, nucleus, vacuole	37.17	31.52
CDY06036	Canola	cytosol	35.56	30.79
CDX80649	Canola	cytosol	35.56	30.79
CDX71951	Canola	plastid	28.34	20.0
CDX92764	Canola	cytosol, nucleus, plasma membrane	10.7	15.81
CDY30423	Canola	extracellular, golgi	7.75	13.3
CDY41819	Canola	cytosol	2.41	12.68

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlants:CDX73615	ProteinID:CDX73615	ProteinID:CDX73615.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00109180001
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PFAM:PF00646	PFAM:PF07723
PFAM:PF08387	PFscan:PS50181	PANTHER:PTHR32212	PANTHER:PTHR32212:SF234	SMART:SM00579	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI0004EBA0D8	SEG:seg	:	:	:

Description

BnaC08g23880D

Coordinates

chrLK031799:-:1645018..1646491

Molecular Weight (calculated)

43632.9 Da

IEP (calculated)

8.207

GRAVY (calculated)

-0.260

Length

374 amino acids

Sequence
(BLAST)

001: MNKDMISHLP EDLIRKILSF LPTKTAIATS LLSKQWRSHW MLAPKLRFDS EDYENEHDET FSKIVSDSFL SHKAPVLESF HLRFGLDKVD PIDVGFWIGI
101: AFARQLRKLV LDFLDLPEEE SFIFPSSLCT CKTLETLKLR NQILLDISSP ASMKSLKKLH LSYVFYKDDE TIYNLLSGCP SLEELIVDRK EPELVEANIS
201: GVPAVISNEF RVSLTSVKRL VLDVSPLETI YPPFGDIFNQ LVHLEMYTRE ALWWDLLSRM LEHSPKLQVL KLVDEYRINP DYRVRGREWK KPKYVPKCLL
301: SHLETFVWTR YDSRRENEEV ATYILKNARQ LKSATFSAKP IEPKELKKFA ERREMFRKLD GVVKASSSCH LVFK

Best Arabidopsis Sequence Match ( AT2G04230.1 )
(BLAST)

001: MEQKFKTDSM NEDRISDLPD ALLLQILSSL PTENAIATSV LSKRWRSLWT MLPKLKFDSN FNPVFDDDNI DPTMFSENVY KTLSLHKAPV LESLHLSFEG
101: RTDCLHVGIW IATAFARGVR KLVLDSFYQE DQTVTLPSVL FSYNDSLEIL KLKCAIDLDF PSRVCLKSLR KLYLDQVHFK DEESVCNLLC GCPSLQDLVV
201: HRYSNADVAT FTIASPSLQR LTIEDLRQEG GYGNGSYVIN APGLKYLNIN GVIDIESCLI DKALELEEAK ISNVSGITNE NILESLTSAK RLILHLSPLE
301: VKVPTGKIFD QLGCLELLTH EREWWNLLSI MLDSSPKLQI LKLTDVYLHD NKTNPDERKW NPPKCAPECL LFHLETFLWI GYEWQRGDEK EVATYILENA
401: RRLKKATFST KRIGREKLED FEKRREMLNE LAIVLWDSNS CHLVFEST

Arabidopsis Description

F-box/FBD/LRR-repeat protein At2g04230 [Source:UniProtKB/Swiss-Prot;Acc:Q6NKX3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.