Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89345 | Canola | cytosol, peroxisome, plastid | 91.41 | 92.07 |
| AT4G26340.1 | Thale cress | cytosol | 65.16 | 65.16 |
| CDY42742 | Canola | cytosol | 58.71 | 58.43 |
| CDX92699 | Canola | cytosol | 43.44 | 58.15 |
| CDX92766 | Canola | cytosol | 27.92 | 56.25 |
| CDY65463 | Canola | cytosol, extracellular, nucleus | 20.29 | 52.47 |
| CDY65306 | Canola | cytosol | 39.14 | 50.62 |
| CDX71950 | Canola | cytosol | 15.51 | 48.87 |
| CDY52334 | Canola | cytosol, nucleus, vacuole | 49.4 | 46.94 |
| CDY06036 | Canola | cytosol | 46.78 | 45.37 |
| CDX80649 | Canola | cytosol | 45.35 | 43.98 |
| CDX73615 | Canola | cytosol | 36.99 | 41.44 |
| CDX78112 | Canola | cytosol | 39.86 | 39.02 |
| CDX83661 | Canola | cytosol, mitochondrion, nucleus | 36.75 | 38.5 |
| CDX94363 | Canola | cytosol | 33.17 | 38.19 |
| CDY01270 | Canola | extracellular, plasma membrane | 26.25 | 38.06 |
| CDX89356 | Canola | cytosol, extracellular, mitochondrion, plastid | 32.7 | 37.64 |
| CDY69799 | Canola | cytosol | 34.37 | 37.5 |
| CDX83662 | Canola | cytosol, plastid | 36.99 | 37.44 |
| CDY69654 | Canola | cytosol | 28.4 | 37.07 |
| CDY23230 | Canola | cytosol | 37.71 | 36.83 |
| CDY23229 | Canola | cytosol | 37.71 | 36.83 |
| CDY13667 | Canola | extracellular, plasma membrane | 24.34 | 36.82 |
| CDY00181 | Canola | plasma membrane, plastid, vacuole | 37.23 | 36.62 |
| CDY48198 | Canola | cytosol | 10.02 | 36.52 |
| CDX95363 | Canola | cytosol | 36.52 | 36.52 |
| CDY72188 | Canola | cytosol | 37.23 | 36.36 |
| CDX87122 | Canola | cytosol | 32.7 | 36.24 |
| CDY48010 | Canola | cytosol | 38.66 | 36.08 |
| CDY00182 | Canola | cytosol | 6.92 | 35.8 |
| CDY48007 | Canola | plastid | 36.99 | 35.39 |
| CDX89785 | Canola | cytosol, extracellular, nucleus | 29.36 | 35.34 |
| CDX92764 | Canola | cytosol, nucleus, plasma membrane | 21.24 | 35.18 |
| CDY37901 | Canola | cytosol | 20.29 | 34.69 |
| CDX93829 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 34.37 | 34.37 |
| CDY48199 | Canola | extracellular, plasma membrane, vacuole | 39.14 | 34.24 |
| CDY37900 | Canola | cytosol, extracellular, nucleus | 10.26 | 33.33 |
| CDX76220 | Canola | endoplasmic reticulum, extracellular | 11.93 | 33.11 |
| CDX88297 | Canola | cytosol | 18.14 | 32.34 |
| CDY63198 | Canola | mitochondrion, plasma membrane | 35.32 | 32.31 |
| CDY65918 | Canola | cytosol | 32.7 | 32.01 |
| CDY00432 | Canola | cytosol | 18.85 | 31.6 |
| CDX71951 | Canola | plastid | 35.08 | 27.74 |
| CDY27513 | Canola | cytosol | 37.47 | 27.12 |
| CDY30423 | Canola | extracellular, golgi | 9.31 | 17.89 |
| CDY41819 | Canola | cytosol | 1.67 | 9.86 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EnsemblPlants:CDX94344 | ProteinID:CDX94344 | ProteinID:CDX94344.1 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00157456001 |
| InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 | PFAM:PF00646 | PFAM:PF07723 |
| PFAM:PF08387 | PANTHER:PTHR32212 | SMART:SM00256 | SMART:SM00579 | SUPFAM:SSF52047 | SUPFAM:SSF81383 |
| UniParc:UPI0004EDF987 | SEG:seg | : | : | : | : |
Description
BnaC01g18400D
Coordinates
chrLK031881:-:371457..373385
Molecular Weight (calculated)
47195.0 Da
IEP (calculated)
5.276
GRAVY (calculated)
0.018
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MDIISHLSDD LLLRILSFVP TKDVVATSLL SKRWECLWTS VSKLGYDDSY HHTGDYKNFS QFVYRSLLSN KAPVLDKLHL KLGPDCPFID VELWINIALS
101: RRVRELEIDL FSKEESFNLP NSLYTSETLE ILTLISCVLV NVPSSVCLPS LKTLKLDRVD YTDNDTLPRL LSGCPNLEVL FVERHVGDET TDSIVVAPSL
201: QRLTMLDTHS GTCGRFVVDV PSLKHLEITD SVAYVDLRRM ENMPVLEKAC VWITSSGVTQ EFLKALTSVH RLSLSLSPSE VMMHPSGMTF NQLVHLDLYT
301: LTEGWWDLLT CMLQDSPKLR FLRLSNNKLT SESKETPIGW RPPSSVPECL LSSLEAFVWI GYNGRQGDRE IAIYLLKNTA CLKTATFSPD STDLGDKYQM
401: LKVLASVATM SASSQLLFD
101: RRVRELEIDL FSKEESFNLP NSLYTSETLE ILTLISCVLV NVPSSVCLPS LKTLKLDRVD YTDNDTLPRL LSGCPNLEVL FVERHVGDET TDSIVVAPSL
201: QRLTMLDTHS GTCGRFVVDV PSLKHLEITD SVAYVDLRRM ENMPVLEKAC VWITSSGVTQ EFLKALTSVH RLSLSLSPSE VMMHPSGMTF NQLVHLDLYT
301: LTEGWWDLLT CMLQDSPKLR FLRLSNNKLT SESKETPIGW RPPSSVPECL LSSLEAFVWI GYNGRQGDRE IAIYLLKNTA CLKTATFSPD STDLGDKYQM
401: LKVLASVATM SASSQLLFD
001: MDRISQLSDD LLLQILSFIP GKDVVATSLL SKRWQSLWML VSELEYDDSY HTGDYKSFSQ FVYRSLLSNN APVIKHLHLN LGPDCPAIDI GLWIGFALTR
101: RLRQLKINIR TSSNDASFSL PSSLYTSDTL ETLRLINFVL LDVPSSVCLP SLKVLHLKTV DYEDDASLPS LLFGCPNLEE LFVERHDQDL EMDVTFVVPS
201: LRRLSMIDKN YGQCDRYVID VPSLKYLNIT DDAVYDVRQI ENMPELVEAH VDITQGVTHK FLRALTSVRQ LSLCLSLSEV MCPSGIIFSQ LVHLNLSTVV
301: KGWWDLLTSM LQDSPKLQSL KLIDKQHESG LCGIETPIGW KLPSSVPECL LFSLEAFEWI GYKGRRGDRE VATYVLKNAA CLRTAKFSPE STDVGEKYHM
401: LKELASVPTA STSSKLLFD
101: RLRQLKINIR TSSNDASFSL PSSLYTSDTL ETLRLINFVL LDVPSSVCLP SLKVLHLKTV DYEDDASLPS LLFGCPNLEE LFVERHDQDL EMDVTFVVPS
201: LRRLSMIDKN YGQCDRYVID VPSLKYLNIT DDAVYDVRQI ENMPELVEAH VDITQGVTHK FLRALTSVRQ LSLCLSLSEV MCPSGIIFSQ LVHLNLSTVV
301: KGWWDLLTSM LQDSPKLQSL KLIDKQHESG LCGIETPIGW KLPSSVPECL LFSLEAFEWI GYKGRRGDRE VATYVLKNAA CLRTAKFSPE STDVGEKYHM
401: LKELASVPTA STSSKLLFD
Arabidopsis Description
F-box/FBD/LRR-repeat protein At4g26340 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1R7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.