CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83662	Canola	cytosol, plastid	67.75	65.46
CDY13667	Canola	extracellular, plasma membrane	44.5	64.26
AT3G26920.3	Thale cress	cytosol	40.75	47.94
CDY00181	Canola	plasma membrane, plastid, vacuole	50.0	46.95
AT3G26930.2	Thale cress	extracellular, peroxisome, plastid	53.25	46.92
CDY69799	Canola	cytosol	45.0	46.88
CDY00432	Canola	cytosol	27.5	44.0
CDY63198	Canola	mitochondrion, plasma membrane	49.75	43.45
CDY69654	Canola	cytosol	34.5	42.99
CDX73615	Canola	cytosol	39.25	41.98
CDY01270	Canola	extracellular, plasma membrane	30.25	41.87
CDX87122	Canola	cytosol	38.5	40.74
CDX93829	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	42.5	40.57
CDX78112	Canola	cytosol	43.25	40.42
CDY48199	Canola	extracellular, plasma membrane, vacuole	48.0	40.08
CDY48007	Canola	plastid	43.75	39.95
CDY37901	Canola	cytosol	24.25	39.59
CDX89785	Canola	cytosol, extracellular, nucleus	34.0	39.08
CDY48010	Canola	cytosol	43.75	38.98
CDY23229	Canola	cytosol	40.5	37.76
CDY23230	Canola	cytosol	40.5	37.76
CDY72188	Canola	cytosol	40.25	37.53
CDX89345	Canola	cytosol, peroxisome, plastid	38.5	37.02
CDX94344	Canola	cytosol, peroxisome, plastid	38.5	36.75
CDX88297	Canola	cytosol	21.5	36.6
CDY65918	Canola	cytosol	38.75	36.22
CDX94363	Canola	cytosol	32.5	35.71
CDX89356	Canola	cytosol, extracellular, mitochondrion, plastid	32.5	35.71
CDX95363	Canola	cytosol	37.0	35.32
CDY65306	Canola	cytosol	28.25	34.88
CDY48198	Canola	cytosol	10.0	34.78
CDY42742	Canola	cytosol	36.25	34.44
CDX92699	Canola	cytosol	26.5	33.87
CDY27513	Canola	cytosol	46.0	31.78
CDY65463	Canola	cytosol, extracellular, nucleus	12.5	30.86
CDY00182	Canola	cytosol	6.25	30.86
CDX80649	Canola	cytosol	32.75	30.32
CDY37900	Canola	cytosol, extracellular, nucleus	9.75	30.23
CDY52334	Canola	cytosol, nucleus, vacuole	33.0	29.93
CDX76220	Canola	endoplasmic reticulum, extracellular	11.25	29.8
CDY06036	Canola	cytosol	32.0	29.63
CDX92766	Canola	cytosol	15.0	28.85
CDX71950	Canola	cytosol	9.0	27.07
CDX71951	Canola	plastid	26.75	20.19
CDX92764	Canola	cytosol, nucleus, plasma membrane	12.75	20.16
CDY30423	Canola	extracellular, golgi	9.0	16.51
CDY41819	Canola	cytosol	1.75	9.86

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlants:CDX83661	ProteinID:CDX83661	ProteinID:CDX83661.1	ncoils:Coil
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00139355001
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	PFAM:PF00646	PFAM:PF07723
PANTHER:PTHR32212	PANTHER:PTHR32212:SF234	SMART:SM00256	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EE2BF3
SEG:seg	:	:	:	:	:

Description

BnaC07g24010D

Coordinates

chrLK031833:+:1392105..1394070

Molecular Weight (calculated)

46396.3 Da

IEP (calculated)

6.377

GRAVY (calculated)

-0.044

Length

400 amino acids

Sequence
(BLAST)

001: MDLKRRSFLR NRDRISELSD ALLLQILSFV PTKDAVATSV LSKRWRYLCK MMPRLRFWYE RTDDLERFSD NVCRFLLSHQ APVLQSLHLE VNSERGSTMD
101: IGVLLGVAFG LHVRELELQV YSWEPYRFPT SLYNCRTLET LKLGSRVLLD VPFPVCLKAL RTLSLFDVSY KDDGSVVNLL SGCSVLENLE VMMFSHPHLG
201: TFTIHVPSLQ NLTLISDSED FSVFVINAPH LKHLNLKGLI DEDSCLIENT PEVVEAHITD VSSVVYENIH GSLTSVKRLS LKIASPLKLT KFNRIFNQLV
301: CLEIHTYEPE WWNLLMLMLH SSPNLQVLKL ISEWFRILDR LTYNRWSQPK YVAECLVNRL ETLVWENYEG DIEDDRERLE RLKELESVVK ASNSCQLVFT

Best Arabidopsis Sequence Match ( AT3G26930.1 )
(BLAST)

001: MSVLSKRWRS LWKMLPRLKF DDWMFPDNVN RCLLSHQASF LQSLHLVIDY DFVSHMHTGI LMGIAFGRHI RELVLYVNGF QESFTFPLSL CNCESLETLT
101: LGHNVLIDVP SPVFLKSLRT LHLDGVEYTD DESVVNLLSG CISLENLVVH RVIQADVTTF TIAVPSLKRL TLTTEFDDDE DSVYVINAPS LKYLKILGDK
201: AYLIENSPEL VEVSLTDRQV TVDGYPIASY VENLLRSLTS VKRMSLKISS YLEIKFPTGS IFYQLVSLEL YTNKAEWWNL LVLMLDSSPK LQVLKLNGKL
301: SGENNHLASM NWDQPKNIPG CLLFNLETFI WKGCKRIGED EKEVAKYILR NTNRLKRATF TREIYEENNS QDMFENLEMV EELESVVRAS KSCKLVFEST
401: LWSLSNYDV

Arabidopsis Description

Protein with RNI-like/FBD-like domain [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSS0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.