Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 2
- mitochondrion 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93829 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 72.66 | 50.12 |
| AT3G51530.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus, plastid | 58.82 | 37.36 |
| CDY69654 | Canola | cytosol | 40.48 | 36.45 |
| CDY69799 | Canola | cytosol | 47.06 | 35.42 |
| CDX87122 | Canola | cytosol | 43.25 | 33.07 |
| CDY65463 | Canola | cytosol, extracellular, nucleus | 17.3 | 30.86 |
| CDY00181 | Canola | plasma membrane, plastid, vacuole | 45.33 | 30.75 |
| CDY48199 | Canola | extracellular, plasma membrane, vacuole | 50.17 | 30.27 |
| CDX83661 | Canola | cytosol, mitochondrion, nucleus | 41.87 | 30.25 |
| CDY48010 | Canola | cytosol | 46.37 | 29.84 |
| CDX73615 | Canola | cytosol | 38.06 | 29.41 |
| CDX88297 | Canola | cytosol | 23.88 | 29.36 |
| CDX71950 | Canola | cytosol | 13.49 | 29.32 |
| CDY63198 | Canola | mitochondrion, plasma membrane | 46.37 | 29.26 |
| CDX78112 | Canola | cytosol | 43.25 | 29.21 |
| CDY65306 | Canola | cytosol | 32.53 | 29.01 |
| CDY48007 | Canola | plastid | 42.56 | 28.08 |
| CDY37901 | Canola | cytosol | 23.53 | 27.76 |
| CDY00432 | Canola | cytosol | 23.88 | 27.6 |
| CDX83662 | Canola | cytosol, plastid | 39.1 | 27.29 |
| CDY72188 | Canola | cytosol | 40.48 | 27.27 |
| CDY23230 | Canola | cytosol | 40.48 | 27.27 |
| CDY23229 | Canola | cytosol | 40.48 | 27.27 |
| CDX95363 | Canola | cytosol | 38.75 | 26.73 |
| CDX94344 | Canola | cytosol, peroxisome, plastid | 38.06 | 26.25 |
| CDX89345 | Canola | cytosol, peroxisome, plastid | 37.37 | 25.96 |
| CDY42742 | Canola | cytosol | 36.68 | 25.18 |
| CDY65918 | Canola | cytosol | 37.02 | 25.0 |
| CDX89356 | Canola | cytosol, extracellular, mitochondrion, plastid | 31.49 | 25.0 |
| CDX94363 | Canola | cytosol | 30.8 | 24.45 |
| CDY27513 | Canola | cytosol | 48.44 | 24.18 |
| CDX89785 | Canola | cytosol, extracellular, nucleus | 29.07 | 24.14 |
| CDX92699 | Canola | cytosol | 24.91 | 23.0 |
| CDY52334 | Canola | cytosol, nucleus, vacuole | 33.56 | 22.0 |
| CDY06036 | Canola | cytosol | 32.87 | 21.99 |
| CDX80649 | Canola | cytosol | 32.53 | 21.76 |
| CDX92766 | Canola | cytosol | 15.22 | 21.15 |
| CDX92764 | Canola | cytosol, nucleus, plasma membrane | 17.65 | 20.16 |
| CDY00182 | Canola | cytosol | 5.19 | 18.52 |
| CDY13667 | Canola | extracellular, plasma membrane | 17.65 | 18.41 |
| CDX76220 | Canola | endoplasmic reticulum, extracellular | 9.0 | 17.22 |
| CDX71951 | Canola | plastid | 26.99 | 14.72 |
| CDY37900 | Canola | cytosol, extracellular, nucleus | 5.19 | 11.63 |
| CDY30423 | Canola | extracellular, golgi | 8.65 | 11.47 |
| CDY48198 | Canola | cytosol | 4.5 | 11.3 |
| CDY41819 | Canola | cytosol | 1.38 | 5.63 |
Protein Annotations
| EnsemblPlants:CDY01270 | EnsemblPlantsGene:GSBRNA2T00111448001 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | PANTHER:PTHR32212 |
| PANTHER:PTHR32212:SF234 | PFAM:PF00646 | PFscan:PS50181 | ProteinID:CDY01270 | ProteinID:CDY01270.1 | SUPFAM:SSF52047 |
| SUPFAM:SSF81383 | UniParc:UPI0004EEDE86 | MapMan:35.1 | : | : | : |
Description
BnaC05g24620D
Coordinates
chrLK031925:-:896335..898552
Molecular Weight (calculated)
32646.2 Da
IEP (calculated)
8.674
GRAVY (calculated)
0.181
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKLFKLLGC FVYLRKRDVV REDRISELPE PLILQILSLL PTKLVISTSV LSKRWRSVWK KVPILEFESK GNINKFAENV SMSLLSHKAP VLEALHLKVS
101: DRCEDVYIGI WAGIAVTRHV RELELDLRFL CGNPVRFVVE SPSLKTLSIS GGETYGKQNG GYVINVPSLQ HLSIQMLKGY EYCLIENAPE LVDANIINVS
201: HTTNETIMGS LKSARRLSLD LSPLEIAYPT GMIFYQLVSL EMYTHKVAWW NLLTLMLDSS PKLQVLKLID VYTLNFPCVA FVSSAKAGF
101: DRCEDVYIGI WAGIAVTRHV RELELDLRFL CGNPVRFVVE SPSLKTLSIS GGETYGKQNG GYVINVPSLQ HLSIQMLKGY EYCLIENAPE LVDANIINVS
201: HTTNETIMGS LKSARRLSLD LSPLEIAYPT GMIFYQLVSL EMYTHKVAWW NLLTLMLDSS PKLQVLKLID VYTLNFPCVA FVSSAKAGF
001: MEQKCKIGGE GLRNRGLVNE EDRISELPEA LLLLILSSLP TETVIATSVL SKQWKSLWKL VPNLKFDSKY HYHYTFSDNV FRSLISHKAP VLDSLHLKVE
101: DKDDALDVGI LIGIAFSRHM RKFVLKITLL EESFVRFPSA WCSCNDTLEI LELKYCILLD FPSLVCLKSL RKLYLYHVRF NDEESVCNLL CGCPSLEDLV
201: VHRHSTTDVE SYTIAVPSLQ RLTIYDDYYG EGVGGYVINA PSLKYLNIDG FNGLEFCLIE KAPELVEAKI SAVFEIANEN IMDSLTSAKC LSLHLAPFKI
301: KYPTGKIFYQ LLSLELRAYS YEWWNLLWFM LDSSPKLQIL KLVDPYQFPK EDCSVGWEWS RPKCVPECLL FHLETFVWTR YEWQREDEKA VATYILKNAR
401: CLKKATLSTK PIGSEELEKL GKRREMLNEL ATQASPSNSC NLVFESE
101: DKDDALDVGI LIGIAFSRHM RKFVLKITLL EESFVRFPSA WCSCNDTLEI LELKYCILLD FPSLVCLKSL RKLYLYHVRF NDEESVCNLL CGCPSLEDLV
201: VHRHSTTDVE SYTIAVPSLQ RLTIYDDYYG EGVGGYVINA PSLKYLNIDG FNGLEFCLIE KAPELVEAKI SAVFEIANEN IMDSLTSAKC LSLHLAPFKI
301: KYPTGKIFYQ LLSLELRAYS YEWWNLLWFM LDSSPKLQIL KLVDPYQFPK EDCSVGWEWS RPKCVPECLL FHLETFVWTR YEWQREDEKA VATYILKNAR
401: CLKKATLSTK PIGSEELEKL GKRREMLNEL ATQASPSNSC NLVFESE
Arabidopsis Description
FBD-associated F-box protein At3g49020 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMT9]
SUBAcon: [plasma membrane,nucleus,cytosol]
SUBAcon: [plasma membrane,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.