Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00182 | Canola | cytosol | 5.5 | 14.81 |
| CDY13667 | Canola | extracellular, plasma membrane | 15.6 | 12.27 |
| CDX89785 | Canola | cytosol, extracellular, nucleus | 18.81 | 11.78 |
| CDX93829 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 22.02 | 11.46 |
| CDY41819 | Canola | cytosol | 3.67 | 11.27 |
| CDX92766 | Canola | cytosol | 10.55 | 11.06 |
| CDY37901 | Canola | cytosol | 11.93 | 10.61 |
| CDY69654 | Canola | cytosol | 15.6 | 10.59 |
| CDY48198 | Canola | cytosol | 5.5 | 10.43 |
| CDY69799 | Canola | cytosol | 18.35 | 10.42 |
| CDX87122 | Canola | cytosol | 17.89 | 10.32 |
| CDX76220 | Canola | endoplasmic reticulum, extracellular | 6.88 | 9.93 |
| CDY48007 | Canola | plastid | 19.72 | 9.82 |
| CDX78112 | Canola | cytosol | 18.81 | 9.58 |
| CDX89345 | Canola | cytosol, peroxisome, plastid | 17.89 | 9.38 |
| CDX89356 | Canola | cytosol, extracellular, mitochondrion, plastid | 15.6 | 9.34 |
| CDX94363 | Canola | cytosol | 15.6 | 9.34 |
| CDY23229 | Canola | cytosol | 18.35 | 9.32 |
| CDY72188 | Canola | cytosol | 18.35 | 9.32 |
| CDX95363 | Canola | cytosol | 17.89 | 9.31 |
| CDX94344 | Canola | cytosol, peroxisome, plastid | 17.89 | 9.31 |
| CDY37900 | Canola | cytosol, extracellular, nucleus | 5.5 | 9.3 |
| CDY65463 | Canola | cytosol, extracellular, nucleus | 6.88 | 9.26 |
| CDY48010 | Canola | cytosol | 18.81 | 9.13 |
| CDY23230 | Canola | cytosol | 17.89 | 9.09 |
| CDX83661 | Canola | cytosol, mitochondrion, nucleus | 16.51 | 9.0 |
| CDY00181 | Canola | plasma membrane, plastid, vacuole | 17.43 | 8.92 |
| CDY42742 | Canola | cytosol | 16.97 | 8.79 |
| CDY01270 | Canola | extracellular, plasma membrane | 11.47 | 8.65 |
| CDX92699 | Canola | cytosol | 12.39 | 8.63 |
| CDX83662 | Canola | cytosol, plastid | 16.05 | 8.45 |
| CDY63198 | Canola | mitochondrion, plasma membrane | 17.43 | 8.3 |
| CDY48199 | Canola | extracellular, plasma membrane, vacuole | 17.43 | 7.93 |
| CDY06036 | Canola | cytosol | 15.6 | 7.87 |
| CDX73615 | Canola | cytosol | 13.3 | 7.75 |
| CDY65306 | Canola | cytosol | 11.47 | 7.72 |
| CDY65918 | Canola | cytosol | 15.14 | 7.71 |
| CDX80649 | Canola | cytosol | 14.68 | 7.41 |
| CDY27513 | Canola | cytosol | 19.27 | 7.25 |
| CDX88297 | Canola | cytosol | 7.8 | 7.23 |
| CDY00432 | Canola | cytosol | 8.26 | 7.2 |
| CDY52334 | Canola | cytosol, nucleus, vacuole | 13.76 | 6.8 |
| AT3G55670.1 | Thale cress | cytosol | 6.42 | 6.42 |
| CDX71951 | Canola | plastid | 15.6 | 6.42 |
| CDX92764 | Canola | cytosol, nucleus, plasma membrane | 7.34 | 6.32 |
| CDX71950 | Canola | cytosol | 1.38 | 2.26 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | GO:A0A078H0S3 | UniProt:A0A078H0S3 | EnsemblPlants:CDY30423 | ProteinID:CDY30423 |
| ProteinID:CDY30423.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00045123001 | InterPro:IPR001810 | InterPro:IPR032675 |
| InterPro:LRR_dom_sf | PFAM:PF00646 | PANTHER:PTHR32212 | SMART:SM00256 | SUPFAM:SSF81383 | TMHMM:TMhelix |
| UniParc:UPI0004EDF2E6 | SEG:seg | : | : | : | : |
Description
BnaA04g25240DBnaA04g25240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H0S3]
Coordinates
chrLK032253:+:230649..232539
Molecular Weight (calculated)
25459.1 Da
IEP (calculated)
10.155
GRAVY (calculated)
0.052
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRHKTKFFR NFLNLKHISF TAPAIVSLFS RILVLREESI GKRDEFRLYD VVFHRGFASF DLSFFFFFSG LSRLRRDGGI HNLVNEFDPF TRSGPSLDRI
101: SQLPDDLLVK ILSSLPTTKD VVATSVLSKQ WRSLWKMVPR LKFICERPND LQGFEDSARM TMLSLQAPYL QSLHLDVSFS QGYIDHHIDL NNYVFFFRNK
201: LSLLLLLFMD LLLILPNS
101: SQLPDDLLVK ILSSLPTTKD VVATSVLSKQ WRSLWKMVPR LKFICERPND LQGFEDSARM TMLSLQAPYL QSLHLDVSFS QGYIDHHIDL NNYVFFFRNK
201: LSLLLLLFMD LLLILPNS
001: MKRCLRNGNG VNEDRISDLP EALLLQILSM LPVKDVVTTS VLSKPWRSLW KLVPTLKFDY ENNQSEDETY SEIVCRLLLS NKAPFLESLH LGFRFGECRS
101: VEVGMWIGIA YARHVRDLVL HVESVKGSFI FPTGLYNCET LESLTLRSWV LVDVPSPACL KSLRTLRLEN VDYKYDDSVY NLLSGCPNLE NLVVYRGNLL
201: EVETFTIAVP SLQRLTIYDD NDGEYCTGYV INAPSLKYLK IDGFKALESC LIENAPELVE ATIMNVSKII NEKLLETLTS VKRLSLALSP LELKFSCNNY
301: SGHLLL
101: VEVGMWIGIA YARHVRDLVL HVESVKGSFI FPTGLYNCET LESLTLRSWV LVDVPSPACL KSLRTLRLEN VDYKYDDSVY NLLSGCPNLE NLVVYRGNLL
201: EVETFTIAVP SLQRLTIYDD NDGEYCTGYV INAPSLKYLK IDGFKALESC LIENAPELVE ATIMNVSKII NEKLLETLTS VKRLSLALSP LELKFSCNNY
301: SGHLLL
Arabidopsis Description
F-box/LRR-repeat protein At3g26922 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJF8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.