CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G52690.1	Thale cress	extracellular, plasma membrane	45.24	57.19
CDY00182	Canola	cytosol	10.05	46.91
CDY48198	Canola	cytosol	13.76	45.22
CDY13667	Canola	extracellular, plasma membrane	33.07	45.13
CDX89785	Canola	cytosol, extracellular, nucleus	41.53	45.11
CDX93829	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	48.94	44.15
CDX89356	Canola	cytosol, extracellular, mitochondrion, plastid	41.8	43.41
CDY01270	Canola	extracellular, plasma membrane	33.07	43.25
CDX78112	Canola	cytosol	48.15	42.52
CDX73615	Canola	cytosol	41.53	41.98
CDX94363	Canola	cytosol	40.21	41.76
CDY37901	Canola	cytosol	26.98	41.63
CDY69654	Canola	cytosol	34.92	41.12
CDY00181	Canola	plasma membrane, plastid, vacuole	45.24	40.14
CDY48010	Canola	cytosol	47.62	40.09
CDY48007	Canola	plastid	45.77	39.5
CDY23229	Canola	cytosol	44.18	38.93
CDX83662	Canola	cytosol, plastid	42.59	38.89
CDX83661	Canola	cytosol, mitochondrion, nucleus	40.74	38.5
CDY72188	Canola	cytosol	43.65	38.46
CDX76220	Canola	endoplasmic reticulum, extracellular	15.34	38.41
CDY69799	Canola	cytosol	38.89	38.28
CDY23230	Canola	cytosol	43.39	38.23
CDY37900	Canola	cytosol, extracellular, nucleus	12.96	37.98
CDY48199	Canola	extracellular, plasma membrane, vacuole	47.88	37.79
CDY63198	Canola	mitochondrion, plasma membrane	45.77	37.77
CDX95363	Canola	cytosol	41.01	36.99
CDX88297	Canola	cytosol	22.22	35.74
CDX92766	Canola	cytosol	19.58	35.58
CDY65918	Canola	cytosol	39.95	35.28
CDX94344	Canola	cytosol, peroxisome, plastid	36.24	32.7
CDX89345	Canola	cytosol, peroxisome, plastid	35.45	32.21
CDY42742	Canola	cytosol	35.45	31.83
CDX92699	Canola	cytosol	25.13	30.35
CDY65463	Canola	cytosol, extracellular, nucleus	12.96	30.25
CDY27513	Canola	cytosol	45.77	29.88
CDY65306	Canola	cytosol	25.4	29.63
CDY06036	Canola	cytosol	31.75	27.78
CDY00432	Canola	cytosol	18.25	27.6
CDX80649	Canola	cytosol	31.48	27.55
CDY52334	Canola	cytosol, nucleus, vacuole	30.95	26.53
CDX71951	Canola	plastid	29.63	21.13
CDX92764	Canola	cytosol, nucleus, plasma membrane	14.02	20.95
CDY30423	Canola	extracellular, golgi	10.32	17.89
CDX71950	Canola	cytosol	5.56	15.79
CDY41819	Canola	cytosol	1.85	9.86

Protein Annotations

EnsemblPlants:CDX87122	EnsemblPlantsGene:GSBRNA2T00146027001	Gene3D:3.80.10.10	InterPro:FBD	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_2	ncoils:Coil	PANTHER:PTHR32212	PANTHER:PTHR32212:SF234	PFAM:PF07723	PFAM:PF08387
ProteinID:CDX87122	ProteinID:CDX87122.1	SMART:SM00579	SUPFAM:SSF52058	UniParc:UPI0004EE92B8	MapMan:35.1

Description

BnaC09g04370D

Coordinates

chrLK031849:-:590146..591481

Molecular Weight (calculated)

43486.1 Da

IEP (calculated)

7.349

GRAVY (calculated)

-0.018

Length

378 amino acids

Sequence
(BLAST)

001: MVPRLVFASP NQKYEDNVIS TSLVSHEAPV LESLRLRLVR HDYMYIGDIR AWLGIAFARH VRELVLDVNF RVSFPGSMFC SASSLETLIL KNSIHVDVPC
101: PVSMKSLKTL HLKDVTYKDD ESVRNLLSGC PSLEDLQVDR GYSIHDAKIF IIAAPSLKRL SICDPCNGRE GGGYVINAPC LKYLEIEMIK GCDFCLIENS
201: PELVEAAIRN VSWIVNETIL RSLKPIKRLS LNLSPLEINC PTGTIFYQLV YLEVYTHKVE WWNLLILMLD NSPKLQVLKI TDCLPCPYYG LVGKKLSEQE
301: YVPECLLSQL ETFVWKNYDW TSEEKKEVAT YILRNAIRLK KAYFFINRIT RKCNELEERL QMLKELVSNS CHFVSKYE

Best Arabidopsis Sequence Match ( AT3G51530.1 )
(BLAST)

001: MKNSERFSAA KPLMEQGGKS SRKPGFMSED RISELPEVLL LQILSSLPTK LVISTSVLSK RWLSLWKMVQ RLEFESSRNI YDFAENVTRS LLSHKAPVLE
101: SLHLKVGDQF DGVYVGVWAT IAFTRHVREF VLDLSSYHGP RVRFPTSLFC FDTLETLKLD YVYIYVPCPV SMKSLRTLHL LSVVYKGDES GHNLFASCPN
201: LEHLVLRRGF FFDAVVNFII DAPSLKTLLL SDPFSARESS RGYVIKAPSL KYLGIESVEG FEYFLIENVT ELVEANIRNV SKIVNENILG SLKSAKRLSL
301: DLSPLKITYP TEVMYHQLVY LEMHTHKVEW WNLLTHMLDS SPKLQVLKLI DRETRHENLE FDKKYKDQGK WNQPKYVPEC LETFMWRNCN WGREEEKEVA
401: TYILRNARQL KKATFSTDPI EAKRLCKLAK RRKMREELDG VVMTSNSCHL VFEFE

Arabidopsis Description

F-box/FBD/LRR-repeat protein At3g51530 [Source:UniProtKB/Swiss-Prot;Acc:Q501E9]
SUBAcon: [endoplasmic reticulum,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.