Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY42742 | Canola | cytosol | 68.37 | 50.83 |
AT4G26340.1 | Thale cress | cytosol | 58.79 | 43.91 |
CDX94344 | Canola | cytosol, peroxisome, plastid | 58.15 | 43.44 |
CDX71950 | Canola | cytosol | 18.21 | 42.86 |
CDX89345 | Canola | cytosol, peroxisome, plastid | 56.23 | 42.31 |
CDX92766 | Canola | cytosol | 24.6 | 37.02 |
CDY06036 | Canola | cytosol | 47.28 | 34.26 |
CDY52334 | Canola | cytosol, nucleus, vacuole | 47.92 | 34.01 |
CDY65306 | Canola | cytosol | 33.87 | 32.72 |
CDX80649 | Canola | cytosol | 45.05 | 32.64 |
CDX73615 | Canola | cytosol | 38.02 | 31.82 |
CDX78112 | Canola | cytosol | 39.3 | 28.74 |
CDY00181 | Canola | plasma membrane, plastid, vacuole | 38.34 | 28.17 |
CDY48198 | Canola | cytosol | 10.22 | 27.83 |
CDX89356 | Canola | cytosol, extracellular, mitochondrion, plastid | 31.63 | 27.2 |
CDX94363 | Canola | cytosol | 31.63 | 27.2 |
CDY13667 | Canola | extracellular, plasma membrane | 23.96 | 27.08 |
CDY23229 | Canola | cytosol | 36.74 | 26.81 |
CDX95363 | Canola | cytosol | 35.78 | 26.73 |
CDY23230 | Canola | cytosol | 36.42 | 26.57 |
CDY72188 | Canola | cytosol | 36.42 | 26.57 |
CDX83662 | Canola | cytosol, plastid | 35.14 | 26.57 |
CDY48010 | Canola | cytosol | 38.02 | 26.5 |
CDX83661 | Canola | cytosol, mitochondrion, nucleus | 33.87 | 26.5 |
CDX92764 | Canola | cytosol, nucleus, plasma membrane | 21.41 | 26.48 |
CDX76220 | Canola | endoplasmic reticulum, extracellular | 12.46 | 25.83 |
CDY69799 | Canola | cytosol | 31.63 | 25.78 |
CDX93829 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 34.19 | 25.54 |
CDY48007 | Canola | plastid | 35.46 | 25.34 |
CDY69654 | Canola | cytosol | 25.88 | 25.23 |
CDX87122 | Canola | cytosol | 30.35 | 25.13 |
CDY63198 | Canola | mitochondrion, plasma membrane | 36.74 | 25.11 |
CDY01270 | Canola | extracellular, plasma membrane | 23.0 | 24.91 |
CDY00432 | Canola | cytosol | 19.81 | 24.8 |
CDY37901 | Canola | cytosol | 19.17 | 24.49 |
CDY48199 | Canola | extracellular, plasma membrane, vacuole | 36.42 | 23.8 |
CDY37900 | Canola | cytosol, extracellular, nucleus | 9.58 | 23.26 |
CDY00182 | Canola | cytosol | 5.75 | 22.22 |
CDX89785 | Canola | cytosol, extracellular, nucleus | 23.64 | 21.26 |
CDY65918 | Canola | cytosol | 29.07 | 21.26 |
CDY27513 | Canola | cytosol | 38.02 | 20.55 |
CDX71951 | Canola | plastid | 33.23 | 19.62 |
CDY65463 | Canola | cytosol, extracellular, nucleus | 9.58 | 18.52 |
CDX88297 | Canola | cytosol | 13.74 | 18.3 |
CDY30423 | Canola | extracellular, golgi | 8.63 | 12.39 |
CDY41819 | Canola | cytosol | 1.92 | 8.45 |
Protein Annotations
Gene3D:3.80.10.10 | MapMan:35.1 | EnsemblPlants:CDX92699 | ProteinID:CDX92699 | ProteinID:CDX92699.1 | InterPro:F-box-like_dom_sf |
InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00154512001 |
InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_2 | PFAM:PF00646 | PFAM:PF07723 |
PFAM:PF08387 | PFscan:PS50181 | PANTHER:PTHR32212 | SMART:SM00579 | SUPFAM:SSF52047 | SUPFAM:SSF81383 |
UniParc:UPI0004EE9D27 | : | : | : | : | : |
Description
BnaC07g39570D
Coordinates
chrLK031873:-:366713..368106
Molecular Weight (calculated)
35451.2 Da
IEP (calculated)
10.198
GRAVY (calculated)
-0.237
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNINHLPED VLLRILSLNT IKPVMATSLL SKRWRSLWTL VPGLSYDDKN HNGDYKSFTQ FVSRSFLSNK APVLEHLHLS LGHGCPFEDI GLWINLALSR
101: HVRELHIHIR SSKKGSLTLP SSLYTSETLQ SLTLIKCVSL DVPVHVRLPS LKTLSLGFVT YADMSLQRLL SGCPNLEALS VEHRSEDSPM GYICPTTKHV
201: GPTHKFLKAL TSVRRLKLWI TRPEKLGWGS RFSNSGRKIP TGWKPPSSVP ECLLHSLEAF EWLRYRGRHG DKEMAAYVLK NATCLKTATF YPKSTHLGKK
301: NRMIKELASE LFD
101: HVRELHIHIR SSKKGSLTLP SSLYTSETLQ SLTLIKCVSL DVPVHVRLPS LKTLSLGFVT YADMSLQRLL SGCPNLEALS VEHRSEDSPM GYICPTTKHV
201: GPTHKFLKAL TSVRRLKLWI TRPEKLGWGS RFSNSGRKIP TGWKPPSSVP ECLLHSLEAF EWLRYRGRHG DKEMAAYVLK NATCLKTATF YPKSTHLGKK
301: NRMIKELASE LFD
001: MKRCLRNGNG VNEDRISDLP EALLLQILSM LPVKDVVTTS VLSKPWRSLW KLVPTLKFDY ENNQSEDETY SEIVCRLLLS NKAPFLESLH LGFRFGECRS
101: VEVGMWIGIA YARHVRDLVL HVESVKGSFI FPTGLYNCET LESLTLRSWV LVDVPSPACL KSLRTLRLEN VDYKYDDSVY NLLSGCPNLE NLVVYRGNLL
201: EVETFTIAVP SLQRLTIYDD NDGEYCTGYV INAPSLKYLK IDGFKALESC LIENAPELVE ATIMNVSKII NEKLLETLTS VKRLSLALSP LELKFSCNNY
301: SGHLLL
101: VEVGMWIGIA YARHVRDLVL HVESVKGSFI FPTGLYNCET LESLTLRSWV LVDVPSPACL KSLRTLRLEN VDYKYDDSVY NLLSGCPNLE NLVVYRGNLL
201: EVETFTIAVP SLQRLTIYDD NDGEYCTGYV INAPSLKYLK IDGFKALESC LIENAPELVE ATIMNVSKII NEKLLETLTS VKRLSLALSP LELKFSCNNY
301: SGHLLL
Arabidopsis Description
F-box/LRR-repeat protein At3g26922 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJF8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.