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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY42742 Canola cytosol 68.37 50.83
AT4G26340.1 Thale cress cytosol 58.79 43.91
CDX94344 Canola cytosol, peroxisome, plastid 58.15 43.44
CDX71950 Canola cytosol 18.21 42.86
CDX89345 Canola cytosol, peroxisome, plastid 56.23 42.31
CDX92766 Canola cytosol 24.6 37.02
CDY06036 Canola cytosol 47.28 34.26
CDY52334 Canola cytosol, nucleus, vacuole 47.92 34.01
CDY65306 Canola cytosol 33.87 32.72
CDX80649 Canola cytosol 45.05 32.64
CDX73615 Canola cytosol 38.02 31.82
CDX78112 Canola cytosol 39.3 28.74
CDY00181 Canola plasma membrane, plastid, vacuole 38.34 28.17
CDY48198 Canola cytosol 10.22 27.83
CDX89356 Canola cytosol, extracellular, mitochondrion, plastid 31.63 27.2
CDX94363 Canola cytosol 31.63 27.2
CDY13667 Canola extracellular, plasma membrane 23.96 27.08
CDY23229 Canola cytosol 36.74 26.81
CDX95363 Canola cytosol 35.78 26.73
CDY23230 Canola cytosol 36.42 26.57
CDY72188 Canola cytosol 36.42 26.57
CDX83662 Canola cytosol, plastid 35.14 26.57
CDY48010 Canola cytosol 38.02 26.5
CDX83661 Canola cytosol, mitochondrion, nucleus 33.87 26.5
CDX92764 Canola cytosol, nucleus, plasma membrane 21.41 26.48
CDX76220 Canola endoplasmic reticulum, extracellular 12.46 25.83
CDY69799 Canola cytosol 31.63 25.78
CDX93829 Canola endoplasmic reticulum, golgi, mitochondrion, plastid 34.19 25.54
CDY48007 Canola plastid 35.46 25.34
CDY69654 Canola cytosol 25.88 25.23
CDX87122 Canola cytosol 30.35 25.13
CDY63198 Canola mitochondrion, plasma membrane 36.74 25.11
CDY01270 Canola extracellular, plasma membrane 23.0 24.91
CDY00432 Canola cytosol 19.81 24.8
CDY37901 Canola cytosol 19.17 24.49
CDY48199 Canola extracellular, plasma membrane, vacuole 36.42 23.8
CDY37900 Canola cytosol, extracellular, nucleus 9.58 23.26
CDY00182 Canola cytosol 5.75 22.22
CDX89785 Canola cytosol, extracellular, nucleus 23.64 21.26
CDY65918 Canola cytosol 29.07 21.26
CDY27513 Canola cytosol 38.02 20.55
CDX71951 Canola plastid 33.23 19.62
CDY65463 Canola cytosol, extracellular, nucleus 9.58 18.52
CDX88297 Canola cytosol 13.74 18.3
CDY30423 Canola extracellular, golgi 8.63 12.39
CDY41819 Canola cytosol 1.92 8.45
Protein Annotations
Gene3D:3.80.10.10MapMan:35.1EnsemblPlants:CDX92699ProteinID:CDX92699ProteinID:CDX92699.1InterPro:F-box-like_dom_sf
InterPro:F-box_domInterPro:FBDGO:GO:0003674GO:GO:0005488GO:GO:0005515EnsemblPlantsGene:GSBRNA2T00154512001
InterPro:IPR001810InterPro:IPR032675InterPro:LRR_dom_sfInterPro:Leu-rich_rpt_2PFAM:PF00646PFAM:PF07723
PFAM:PF08387PFscan:PS50181PANTHER:PTHR32212SMART:SM00579SUPFAM:SSF52047SUPFAM:SSF81383
UniParc:UPI0004EE9D27:::::
Description
BnaC07g39570D
Coordinates
chrLK031873:-:366713..368106
Molecular Weight (calculated)
35451.2 Da
IEP (calculated)
10.198
GRAVY (calculated)
-0.237
Length
313 amino acids
Sequence
(BLAST)
001: MDNINHLPED VLLRILSLNT IKPVMATSLL SKRWRSLWTL VPGLSYDDKN HNGDYKSFTQ FVSRSFLSNK APVLEHLHLS LGHGCPFEDI GLWINLALSR
101: HVRELHIHIR SSKKGSLTLP SSLYTSETLQ SLTLIKCVSL DVPVHVRLPS LKTLSLGFVT YADMSLQRLL SGCPNLEALS VEHRSEDSPM GYICPTTKHV
201: GPTHKFLKAL TSVRRLKLWI TRPEKLGWGS RFSNSGRKIP TGWKPPSSVP ECLLHSLEAF EWLRYRGRHG DKEMAAYVLK NATCLKTATF YPKSTHLGKK
301: NRMIKELASE LFD
Best Arabidopsis Sequence Match ( AT3G26922.1 )
(BLAST)
001: MKRCLRNGNG VNEDRISDLP EALLLQILSM LPVKDVVTTS VLSKPWRSLW KLVPTLKFDY ENNQSEDETY SEIVCRLLLS NKAPFLESLH LGFRFGECRS
101: VEVGMWIGIA YARHVRDLVL HVESVKGSFI FPTGLYNCET LESLTLRSWV LVDVPSPACL KSLRTLRLEN VDYKYDDSVY NLLSGCPNLE NLVVYRGNLL
201: EVETFTIAVP SLQRLTIYDD NDGEYCTGYV INAPSLKYLK IDGFKALESC LIENAPELVE ATIMNVSKII NEKLLETLTS VKRLSLALSP LELKFSCNNY
301: SGHLLL
Arabidopsis Description
F-box/LRR-repeat protein At3g26922 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJF8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.