CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13667	Canola	extracellular, plasma membrane	47.58	71.12
CDX83661	Canola	cytosol, mitochondrion, nucleus	65.46	67.75
AT3G26930.2	Thale cress	extracellular, peroxisome, plastid	53.62	48.9
AT3G26920.3	Thale cress	cytosol	39.86	48.53
CDY00182	Canola	cytosol	9.42	48.15
CDY48198	Canola	cytosol	13.29	47.83
CDY00181	Canola	plasma membrane, plastid, vacuole	48.79	47.42
CDY69799	Canola	cytosol	42.03	45.31
CDY69654	Canola	cytosol	34.78	44.86
CDY00432	Canola	cytosol	27.05	44.8
CDY63198	Canola	mitochondrion, plasma membrane	47.58	43.01
CDX88297	Canola	cytosol	24.4	42.98
CDX87122	Canola	cytosol	38.89	42.59
CDX93829	Canola	endoplasmic reticulum, golgi, mitochondrion, plastid	42.51	42.0
CDX78112	Canola	cytosol	43.24	41.82
CDX73615	Canola	cytosol	37.44	41.44
CDX89785	Canola	cytosol, extracellular, nucleus	34.78	41.38
CDY48199	Canola	extracellular, plasma membrane, vacuole	47.34	40.92
CDY48010	Canola	cytosol	43.96	40.53
CDY48007	Canola	plastid	42.51	40.18
CDY37900	Canola	cytosol, extracellular, nucleus	12.32	39.53
CDY23230	Canola	cytosol	40.82	39.39
CDY72188	Canola	cytosol	40.82	39.39
CDY37901	Canola	cytosol	23.19	39.18
CDY23229	Canola	cytosol	40.58	39.16
CDY01270	Canola	extracellular, plasma membrane	27.29	39.1
CDY65918	Canola	cytosol	39.86	38.55
CDX94363	Canola	cytosol	33.33	37.91
CDX89345	Canola	cytosol, peroxisome, plastid	37.92	37.74
CDX89356	Canola	cytosol, extracellular, mitochondrion, plastid	32.85	37.36
CDY42742	Canola	cytosol	37.92	37.29
CDX95363	Canola	cytosol	37.68	37.23
CDX94344	Canola	cytosol, peroxisome, plastid	37.44	36.99
CDX92699	Canola	cytosol	26.57	35.14
CDY65306	Canola	cytosol	27.29	34.88
CDX92766	Canola	cytosol	17.15	34.13
CDX76220	Canola	endoplasmic reticulum, extracellular	12.08	33.11
CDY27513	Canola	cytosol	45.41	32.47
CDY52334	Canola	cytosol, nucleus, vacuole	33.82	31.75
CDY06036	Canola	cytosol	32.13	30.79
CDX80649	Canola	cytosol	31.88	30.56
CDX71950	Canola	cytosol	9.66	30.08
CDY65463	Canola	cytosol, extracellular, nucleus	9.66	24.69
CDX92764	Canola	cytosol, nucleus, plasma membrane	14.01	22.92
CDX71951	Canola	plastid	27.54	21.51
CDY30423	Canola	extracellular, golgi	8.45	16.05
CDY41819	Canola	cytosol	1.21	7.04

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlants:CDX83662	ProteinID:CDX83662	ProteinID:CDX83662.1	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:FBD	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00139356001
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF00646	PFAM:PF08387	PFscan:PS50181
PANTHER:PTHR32212	PANTHER:PTHR32212:SF234	SMART:SM00256	SMART:SM00579	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI0004EE0E8E	SEG:seg	:	:	:	:

Description

BnaC07g24020D

Coordinates

chrLK031833:+:1395612..1398422

Molecular Weight (calculated)

47292.4 Da

IEP (calculated)

6.867

GRAVY (calculated)

-0.037

Length

414 amino acids

Sequence
(BLAST)

001: MSAELFSSYS ATKRCHTLSN GDRISELPDA LLLQILSLIP TKDAVATSVL SKRWRFLCKM TPNLRFCYHG TKGLVRFSDN VCRCLLSHQA PVLQSLHLKM
101: ILKNDSTIDV GVLLGIAFGR HVRELELEVY SSDEPYSFPT SLYNCGTGTL ETLKLGHNVL VDVPFPVCLK ALRTLRLNAV SYNDAGSVVN LLSGCSSLEN
201: LEVMMYLHPD VENFTIDVPS LQCLTLVAAD EEYAYFSSYV INAPSLKYLN LKGLIDEESS LLIENMPELV EAHITDTKFP TDIIFKQLVY LELHIYAPER
301: WNLLILMLHS SPNLQVLKLI GEWFRKRDHP HKKWSQPKYV PECLVNRIET LVWNHYNGEV EDERKVAQYI LRNASRLETA TFSRLDIHLE KRLERLKELE
401: SVVWASNSCK LVFK

Best Arabidopsis Sequence Match ( AT3G26930.2 )
(BLAST)

001: MNRGGFSLYS KSCGQSLSNE DRISELPEAL LLQILSLLPT KKVVAMSVLS KRWRSLWKML PRLKFDDWMF PDNVNRCLLS HQASFLQSLH LVIDYDFVSH
101: MHTGILMGIA FGRHIRELVL YVNGFQESFT FPLSLCNCES LETLTLGHNV LIDVPSPVFL KSLRTLHLDG VEYTDDESVV NLLSGCISLE NLVVHRVIQA
201: DVTTFTIAVP SLKRLTLTTE FDDDEDSVYV INAPSLKYLK ILGDKAYLIE NSPELVEVSL TDRQVTVDGY PIASYVENLL RSLTSVKRMS LKISSYLEIK
301: FPTGSIFYQL VSLELYTNKA EWWNLLVLML DSSPKLQVLK LNGKLSGENN HLASMNWDQP KNIPGCLLFN LETFIWKGCK RIGEDEKEVA KYILRNTNRL
401: KRATFTREIY EENNSQDMFE NLEMVEELES VVRASKSCKL VFESTLWSLS NYDV

Arabidopsis Description

Protein with RNI-like/FBD-like domain [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSS0]
SUBAcon: [peroxisome,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.