Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00182 | Canola | cytosol | 15.38 | 39.51 |
| CDY65463 | Canola | cytosol, extracellular, nucleus | 29.33 | 37.65 |
| CDY48198 | Canola | cytosol | 20.19 | 36.52 |
| CDY37900 | Canola | cytosol, extracellular, nucleus | 21.63 | 34.88 |
| CDY42742 | Canola | cytosol | 61.54 | 30.4 |
| AT4G26340.1 | Thale cress | cytosol | 60.1 | 29.83 |
| CDX76220 | Canola | endoplasmic reticulum, extracellular | 20.67 | 28.48 |
| CDX94344 | Canola | cytosol, peroxisome, plastid | 56.25 | 27.92 |
| CDX89345 | Canola | cytosol, peroxisome, plastid | 54.81 | 27.4 |
| CDX92699 | Canola | cytosol | 37.02 | 24.6 |
| CDX88297 | Canola | cytosol | 26.92 | 23.83 |
| CDY52334 | Canola | cytosol, nucleus, vacuole | 45.19 | 21.32 |
| CDX80649 | Canola | cytosol | 43.75 | 21.06 |
| CDY06036 | Canola | cytosol | 43.75 | 21.06 |
| CDY69654 | Canola | cytosol | 32.21 | 20.87 |
| CDX89785 | Canola | cytosol, extracellular, nucleus | 34.62 | 20.69 |
| CDX94363 | Canola | cytosol | 36.06 | 20.6 |
| CDX89356 | Canola | cytosol, extracellular, mitochondrion, plastid | 35.58 | 20.33 |
| CDY13667 | Canola | extracellular, plasma membrane | 26.44 | 19.86 |
| CDX87122 | Canola | cytosol | 35.58 | 19.58 |
| CDY48007 | Canola | plastid | 38.94 | 18.49 |
| CDX73615 | Canola | cytosol | 32.69 | 18.18 |
| CDY00181 | Canola | plasma membrane, plastid, vacuole | 37.02 | 18.08 |
| CDY48010 | Canola | cytosol | 38.46 | 17.82 |
| CDX78112 | Canola | cytosol | 36.54 | 17.76 |
| CDX83662 | Canola | cytosol, plastid | 34.13 | 17.15 |
| CDX93829 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 33.65 | 16.71 |
| CDY65306 | Canola | cytosol | 25.96 | 16.67 |
| CDY23230 | Canola | cytosol | 34.13 | 16.55 |
| CDY72188 | Canola | cytosol | 34.13 | 16.55 |
| CDY63198 | Canola | mitochondrion, plasma membrane | 36.06 | 16.38 |
| CDY23229 | Canola | cytosol | 33.65 | 16.32 |
| CDX95363 | Canola | cytosol | 32.69 | 16.23 |
| CDX71951 | Canola | plastid | 41.35 | 16.23 |
| CDY48199 | Canola | extracellular, plasma membrane, vacuole | 36.06 | 15.66 |
| CDY01270 | Canola | extracellular, plasma membrane | 21.15 | 15.22 |
| CDX83661 | Canola | cytosol, mitochondrion, nucleus | 28.85 | 15.0 |
| CDY69799 | Canola | cytosol | 27.4 | 14.84 |
| CDY27513 | Canola | cytosol | 37.98 | 13.64 |
| CDY65918 | Canola | cytosol | 26.44 | 12.85 |
| CDY00432 | Canola | cytosol | 13.94 | 11.6 |
| CDY37901 | Canola | cytosol | 12.98 | 11.02 |
| CDY30423 | Canola | extracellular, golgi | 11.06 | 10.55 |
| CDY41819 | Canola | cytosol | 3.37 | 9.86 |
| CDX92764 | Canola | cytosol, nucleus, plasma membrane | 11.06 | 9.09 |
| CDX71950 | Canola | cytosol | 2.88 | 4.51 |
Protein Annotations
| EnsemblPlants:CDX92766 | EnsemblPlantsGene:GSBRNA2T00154588001 | InterPro:FBD | PANTHER:PTHR32212 | PFAM:PF08387 | ProteinID:CDX92766 |
| ProteinID:CDX92766.1 | SMART:SM00579 | UniParc:UPI0004EEFE4B | MapMan:35.1 | : | : |
Description
BnaC07g40240D
Coordinates
chrLK031873:+:735783..736625
Molecular Weight (calculated)
23639.7 Da
IEP (calculated)
7.890
GRAVY (calculated)
-0.013
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQQSFESRR LYVLDAPSLK YLKISDTVSW NLRQIENMPE LVRAHVNIWG GDSTQRFLKA LTSVRHLTLS MTTPKFVNPS GVIFNQLVHL VLCTFSGHCW
101: DLVICMLQDS PKLRFLKLID DELGIYLSGI DIPTGWKQPI SVPECLLHSL EAFEWFGYRG RQGEREMATY VLKNATCLKT ATFSPLSTDL GEKYQMLKEL
201: ASVATASF
101: DLVICMLQDS PKLRFLKLID DELGIYLSGI DIPTGWKQPI SVPECLLHSL EAFEWFGYRG RQGEREMATY VLKNATCLKT ATFSPLSTDL GEKYQMLKEL
201: ASVATASF
001: MDRISQLSDD LLLQILSFIP GKDVVATSLL SKRWQSLWML VSELEYDDSY HTGDYKSFSQ FVYRSLLSNN APVIKHLHLN LGPDCPAIDI GLWIGFALTR
101: RLRQLKINIR TSSNDASFSL PSSLYTSDTL ETLRLINFVL LDVPSSVCLP SLKVLHLKTV DYEDDASLPS LLFGCPNLEE LFVERHDQDL EMDVTFVVPS
201: LRRLSMIDKN YGQCDRYVID VPSLKYLNIT DDAVYDVRQI ENMPELVEAH VDITQGVTHK FLRALTSVRQ LSLCLSLSEV MCPSGIIFSQ LVHLNLSTVV
301: KGWWDLLTSM LQDSPKLQSL KLIDKQHESG LCGIETPIGW KLPSSVPECL LFSLEAFEWI GYKGRRGDRE VATYVLKNAA CLRTAKFSPE STDVGEKYHM
401: LKELASVPTA STSSKLLFD
101: RLRQLKINIR TSSNDASFSL PSSLYTSDTL ETLRLINFVL LDVPSSVCLP SLKVLHLKTV DYEDDASLPS LLFGCPNLEE LFVERHDQDL EMDVTFVVPS
201: LRRLSMIDKN YGQCDRYVID VPSLKYLNIT DDAVYDVRQI ENMPELVEAH VDITQGVTHK FLRALTSVRQ LSLCLSLSEV MCPSGIIFSQ LVHLNLSTVV
301: KGWWDLLTSM LQDSPKLQSL KLIDKQHESG LCGIETPIGW KLPSSVPECL LFSLEAFEWI GYKGRRGDRE VATYVLKNAA CLRTAKFSPE STDVGEKYHM
401: LKELASVPTA STSSKLLFD
Arabidopsis Description
F-box/FBD/LRR-repeat protein At4g26340 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1R7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.