Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48198 | Canola | cytosol | 20.0 | 43.48 |
| CDY00182 | Canola | cytosol | 12.4 | 38.27 |
| CDY69799 | Canola | cytosol | 49.6 | 32.29 |
| CDY37900 | Canola | cytosol, extracellular, nucleus | 15.6 | 30.23 |
| CDY69654 | Canola | cytosol | 37.6 | 29.28 |
| CDY48199 | Canola | extracellular, plasma membrane, vacuole | 54.0 | 28.18 |
| CDX73615 | Canola | cytosol | 41.6 | 27.81 |
| AT2G04230.1 | Thale cress | cytosol | 49.6 | 27.68 |
| CDX83661 | Canola | cytosol, mitochondrion, nucleus | 44.0 | 27.5 |
| CDX93829 | Canola | endoplasmic reticulum, golgi, mitochondrion, plastid | 45.6 | 27.21 |
| CDX83662 | Canola | cytosol, plastid | 44.8 | 27.05 |
| AT3G49030.1 | Thale cress | cytosol | 47.2 | 26.64 |
| CDY00181 | Canola | plasma membrane, plastid, vacuole | 45.2 | 26.53 |
| CDY48007 | Canola | plastid | 45.6 | 26.03 |
| CDY13667 | Canola | extracellular, plasma membrane | 28.8 | 25.99 |
| CDX88297 | Canola | cytosol | 24.4 | 25.96 |
| CDY48010 | Canola | cytosol | 46.4 | 25.84 |
| CDX78112 | Canola | cytosol | 42.8 | 25.0 |
| CDY63198 | Canola | mitochondrion, plasma membrane | 45.6 | 24.89 |
| CDY01270 | Canola | extracellular, plasma membrane | 27.6 | 23.88 |
| CDX76220 | Canola | endoplasmic reticulum, extracellular | 13.6 | 22.52 |
| CDY72188 | Canola | cytosol | 38.0 | 22.14 |
| CDY23230 | Canola | cytosol | 37.6 | 21.91 |
| CDY23229 | Canola | cytosol | 37.6 | 21.91 |
| CDX71950 | Canola | cytosol | 11.6 | 21.8 |
| CDY27513 | Canola | cytosol | 50.4 | 21.76 |
| CDX95363 | Canola | cytosol | 36.0 | 21.48 |
| CDY65918 | Canola | cytosol | 34.4 | 20.09 |
| CDX89785 | Canola | cytosol, extracellular, nucleus | 27.6 | 19.83 |
| CDX92699 | Canola | cytosol | 24.8 | 19.81 |
| CDY42742 | Canola | cytosol | 32.4 | 19.24 |
| CDX94344 | Canola | cytosol, peroxisome, plastid | 31.6 | 18.85 |
| CDY52334 | Canola | cytosol, nucleus, vacuole | 32.8 | 18.59 |
| CDX89345 | Canola | cytosol, peroxisome, plastid | 30.8 | 18.51 |
| CDX87122 | Canola | cytosol | 27.6 | 18.25 |
| CDY65306 | Canola | cytosol | 23.6 | 18.21 |
| CDX80649 | Canola | cytosol | 30.4 | 17.59 |
| CDY37901 | Canola | cytosol | 17.2 | 17.55 |
| CDX89356 | Canola | cytosol, extracellular, mitochondrion, plastid | 24.8 | 17.03 |
| CDY06036 | Canola | cytosol | 28.8 | 16.67 |
| CDY65463 | Canola | cytosol, extracellular, nucleus | 10.4 | 16.05 |
| CDX94363 | Canola | cytosol | 22.8 | 15.66 |
| CDX92766 | Canola | cytosol | 11.6 | 13.94 |
| CDX71951 | Canola | plastid | 26.0 | 12.26 |
| CDX92764 | Canola | cytosol, nucleus, plasma membrane | 10.4 | 10.28 |
| CDY41819 | Canola | cytosol | 2.4 | 8.45 |
| CDY30423 | Canola | extracellular, golgi | 7.2 | 8.26 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EnsemblPlants:CDY00432 | ProteinID:CDY00432 | ProteinID:CDY00432.1 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | InterPro:FBD | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00110082001 |
| InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | PFAM:PF00646 | PFAM:PF08387 | PFscan:PS50181 |
| PANTHER:PTHR32212 | PANTHER:PTHR32212:SF234 | SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI0004EF132D | : |
Description
BnaC07g13940D
Coordinates
chrLK031918:+:993721..995253
Molecular Weight (calculated)
29716.8 Da
IEP (calculated)
5.755
GRAVY (calculated)
-0.240
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQQQCLGNE NEDRISELPE VLLVHILSSL RTKELIATSV LSKRWRYLWK MVPNLNFDCT TYGPVDIGIL VGIGFSHHVR KLALYHLRED LEEAFRFPSV
101: LCSYNNTLHT LKLMYDVHLE FPSRVCLNAL RELYLYDPSL VSLELHVNEL NVGNLWLMLD SSPKLQKLKL ISLFCDYFPV EWEWNQTKRV PECLLFHLET
201: FMWTEYEWER EDEKQVGHIH PPERWTVEES NFSCWKSWKR ASTSCHLVLE
101: LCSYNNTLHT LKLMYDVHLE FPSRVCLNAL RELYLYDPSL VSLELHVNEL NVGNLWLMLD SSPKLQKLKL ISLFCDYFPV EWEWNQTKRV PECLLFHLET
201: FMWTEYEWER EDEKQVGHIH PPERWTVEES NFSCWKSWKR ASTSCHLVLE
001: MEQLCGGDCL RLFENEDRIS ELHEALLVHI MSSLPTKTVV ATSVLSKRWR HVWKTVQNLK FVSKYHQTFS EDVYRFFMLH KAPFLESLDL EFSNQLDASD
101: LGILVGIAFA RHVRNLVLDL DYYSNFSQLC AARFPSGLCI YDNNKTLETL TLKHSILLYF PYRVCLKSLR KLHLYKVHFY GKDSVYNLLC GCPSLRDLIV
201: HRYRECMETF TIAVPSLERL TIEDSGFGYG CCYVINAPSL KYLNIRRFKY LNSCLIEKAP ELAEAKVSDV SDIENENILE SLTSAKRLSI HLSPLEIKYP
301: SGSIFHQLLS L
101: LGILVGIAFA RHVRNLVLDL DYYSNFSQLC AARFPSGLCI YDNNKTLETL TLKHSILLYF PYRVCLKSLR KLHLYKVHFY GKDSVYNLLC GCPSLRDLIV
201: HRYRECMETF TIAVPSLERL TIEDSGFGYG CCYVINAPSL KYLNIRRFKY LNSCLIEKAP ELAEAKVSDV SDIENENILE SLTSAKRLSI HLSPLEIKYP
301: SGSIFHQLLS L
Arabidopsis Description
F-box/RNI-like superfamily protein [Source:TAIR;Acc:AT3G49040]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.