Factsheet for AT2G04230.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G49045.1	Thale cress	cytosol	16.96	64.41
AT3G49030.1	Thale cress	cytosol	63.17	63.88
AT3G49020.1	Thale cress	cytosol, nucleus, plasma membrane	61.83	61.97
CDY48198	Canola	cytosol	15.85	61.74
Bra034324.1-P	Field mustard	cytosol	15.62	60.87
CDY69654	Canola	cytosol	42.63	59.5
CDY69799	Canola	cytosol	49.11	57.29
AT3G49040.1	Thale cress	cytosol	38.84	55.95
AT4G13965.1	Thale cress	endoplasmic reticulum, peroxisome	49.33	52.25
CDY48199	Canola	extracellular, plasma membrane, vacuole	55.8	52.19
AT3G52690.1	Thale cress	extracellular, plasma membrane	34.82	52.17
AT3G26922.2	Thale cress	cytosol	34.6	50.65
CDY00432	Canola	cytosol	27.68	49.6
AT3G51530.1	Thale cress	cytosol, endoplasmic reticulum, nucleus, plastid	50.0	49.23
AT3G52680.1	Thale cress	cytosol	50.0	49.12
AT3G26920.3	Thale cress	cytosol	35.27	46.47
AT4G00160.1	Thale cress	cytosol	46.88	46.36
AT3G26930.2	Thale cress	extracellular, peroxisome, plastid	46.88	46.26
AT1G55030.2	Thale cress	cytosol	43.97	45.6
AT4G26340.1	Thale cress	cytosol	38.62	41.29
AT4G26350.1	Thale cress	cytosol	34.82	36.19
AT3G55670.1	Thale cress	cytosol	14.73	30.28

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EntrezGene:814960	ProteinID:AAD27915.1	ProteinID:AEC05809.1	EMBL:AK176557
ArrayExpress:AT2G04230	EnsemblPlantsGene:AT2G04230	RefSeq:AT2G04230	TAIR:AT2G04230	RefSeq:AT2G04230-TAIR-G	EnsemblPlants:AT2G04230.1
TAIR:AT2G04230.1	Unigene:At.41333	EMBL:BT012570	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:FBD
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	InterPro:IPR001810	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_2	RefSeq:NP_178506.3	PFAM:PF00646	PFAM:PF07723	PFAM:PF08387
PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001017	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025195	PO:PO:0025281	PFscan:PS50181	PANTHER:PTHR32212	PANTHER:PTHR32212:SF234	UniProt:Q6NKX3
SMART:SM00256	SMART:SM00579	SUPFAM:SSF52058	SUPFAM:SSF81383	UniParc:UPI000034EE30	:

Description

F-box/FBD/LRR-repeat protein At2g04230 [Source:UniProtKB/Swiss-Prot;Acc:Q6NKX3]

Coordinates

chr2:-:1446795..1449100

Molecular Weight (calculated)

51311.7 Da

IEP (calculated)

5.155

GRAVY (calculated)

-0.206

Length

448 amino acids

Sequence
(BLAST)

001: MEQKFKTDSM NEDRISDLPD ALLLQILSSL PTENAIATSV LSKRWRSLWT MLPKLKFDSN FNPVFDDDNI DPTMFSENVY KTLSLHKAPV LESLHLSFEG
101: RTDCLHVGIW IATAFARGVR KLVLDSFYQE DQTVTLPSVL FSYNDSLEIL KLKCAIDLDF PSRVCLKSLR KLYLDQVHFK DEESVCNLLC GCPSLQDLVV
201: HRYSNADVAT FTIASPSLQR LTIEDLRQEG GYGNGSYVIN APGLKYLNIN GVIDIESCLI DKALELEEAK ISNVSGITNE NILESLTSAK RLILHLSPLE
301: VKVPTGKIFD QLGCLELLTH EREWWNLLSI MLDSSPKLQI LKLTDVYLHD NKTNPDERKW NPPKCAPECL LFHLETFLWI GYEWQRGDEK EVATYILENA
401: RRLKKATFST KRIGREKLED FEKRREMLNE LAIVLWDSNS CHLVFEST

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.